C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myomesin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179759 Myom1-203 ENSMUSG00000024049 10090 + 17:71019568-71126856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179759
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179759 0.398±0.14 19.337±2.65 0.200±0.12 7.877±3.86 1.257±0.14 55.094±13.01 0.779±0.18 0.295±0.27 2.011±1.59 241.835±17.97 6.282±0.00 0.698±0.31 0.261±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006KY CIL_0006KY_0002 CGP 17:70993656-71126856
CIL_000157 CIL_000157_0002 CGP 17:71019521-71249817

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005856 TAS cytoskeleton
GO:0006936 IDA muscle contraction
GO:0030017 IDA sarcomere
GO:0031430 IDA M band
GO:0032982 IEA myosin filament
GO:0042803 IDA protein homodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261606 MYOM1-003 protein_coding Homo_sapiens 0 4375
ENST00000356443 MYOM1-001 protein_coding Homo_sapiens 0 2396
ENST00000400569 MYOM1-201 protein_coding Homo_sapiens 0 4346
ENST00000581075 MYOM1-004 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000581804 MYOM1-006 processed_transcript Homo_sapiens 0 364
ENST00000582016 MYOM1-005 processed_transcript Homo_sapiens 0 241

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