C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 29124
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000186576 RP24-241N3.1-001 ENSMUSG00000099949 10090 - 1:80897654-80898105 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverMuscleOvaryPlacentaENSMUST00000186576
Transcript ID Adipose Bladder Brain Breast Liver Muscle Ovary Placenta
ENSMUST00000186576 0.180±0.00 0.042±0.00 0.096±0.01 0.328±0.00 0.024±0.00 0.140±0.00 0.146±0.02 0.158±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006XS CIL_0006XS_0002 CGP 1:80501073-81341764

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 448
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 448
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 448
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 448
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 392
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 448
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 448
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 302
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 448
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 279
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 379
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 3e-39 165
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 283
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 340
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 303
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 305
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 9.80909e-45 183
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 193
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 211
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 427
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 4.99997e-41 171
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 370

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