C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: splicing factor 3b, subunit 3, 130kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000302516 SF3B3-001 ENSG00000189091 9606 + 16:70523788-70577668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302516
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302516 1.520±0.00 2.973±0.00 1.244±0.00 6.570±0.00 3.393±1.10 4.027±0.00 2.015±0.82 3.451±1.67 1.707±0.27 2.257±0.99 6.130±0.00 4.525±3.00 4.717±3.81 2.949±1.23

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000375 TAS RNA splicing, via transesterification reactions
GO:0000398 IC mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 TAS spliceosomal complex
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 TAS mRNA processing
GO:0006461 TAS protein complex assembly
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0030532 TAS small nuclear ribonucleoprotein complex
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042012 Sf3b3-201 protein_coding Mus_musculus 0 4966
ENSDART00000008310 sf3b3-201 protein_coding Danio_rerio 0 2501
ENSDART00000147743 sf3b3-001 protein_coding Danio_rerio 0 2501
ENSDART00000122831 sf3b3-202 protein_coding Danio_rerio 0 2490

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