C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ALX homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316824 ALX1-001 ENSG00000180318 9606 + 12:85280107-85301784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000316824
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000316824 0.010±0.00 0.100±0.00 0.019±0.00 0.009±0.00 1.283±0.00 0.243±0.00 0.039±0.00 0.239±0.13 0.060±0.00 0.372±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000219 CIL_000219_0002 CGP 12:85036314-85301784
CIL_000216 CIL_000216_0002 CGP 12:85280107-85836570

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001228 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001502 TAS cartilage condensation
GO:0001843 IEA neural tube closure
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003714 TAS transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0007420 TAS brain development
GO:0009952 IEA anterior/posterior pattern specification
GO:0014031 IEA mesenchymal cell development
GO:0030326 IEA embryonic limb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IEA protein heterodimerization activity
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0060021 IEA palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040859 Alx1-201 protein_coding Mus_musculus 0 1788
ENSMUST00000167156 Alx1-001 protein_coding Mus_musculus 0 1788
ENSMUST00000164226 Alx1-002 processed_transcript Mus_musculus 0 1005

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