C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: hemoglobin, gamma G
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336906 HBG2-201 ENSG00000196565 9606 - 11:5253202-5254811 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonKidneyLungOvaryPlacentaENST00000336906
Transcript ID Breast Colon Kidney Lung Ovary Placenta
ENST00000336906 17.196±0.00 3.979±0.00 1.063±0.00 8.779±0.00 0.258±0.16 764.882±434.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PR CIL_0007PR_0001 VISTA 11:4975331-5576811
CIL_0003R8 CIL_0003R8_0003 CGP 11:5232678-5249892
CIL_0003R8 CIL_0003R8_0002 CGP 11:5248083-5645789

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005344 IEA oxygen transporter activity
GO:0005506 IEA iron ion binding
GO:0005829 TAS cytosol
GO:0005833 IEA hemoglobin complex
GO:0007596 TAS blood coagulation
GO:0015671 IEA oxygen transport
GO:0019825 IEA oxygen binding
GO:0020037 IEA heme binding
GO:0072562 IDA blood microparticle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000063957 Hbb-bh1-001 protein_coding Mus_musculus 0 337
ENSMUST00000023934 Hbb-bs-001 protein_coding Mus_musculus 0 291
ENSMUST00000098192 Hbb-bt-001 protein_coding Mus_musculus 0 287
ENSMUST00000131960 Hbb-bs-003 retained_intron Mus_musculus 0 263
ENSMUST00000153218 Hbb-bs-002 protein_coding Mus_musculus 0 237
ENSMUST00000106866 Hbb-bh2-001 protein_coding Mus_musculus 6e-18 95

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