C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type IX, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000357250 COL9A1-001 ENSG00000112280 9606 - 6:70215061-70303083 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENST00000357250
Transcript ID Liver
ENST00000357250 0.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00061Y CIL_00061Y_0002 CGP 6:70215061-70561174

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001894 IEA tissue homeostasis
GO:0003417 IEA growth plate cartilage development
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005594 IDA collagen type IX trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0007411 TAS axon guidance
GO:0009887 TAS organ morphogenesis
GO:0022617 TAS extracellular matrix disassembly
GO:0030020 IC extracellular matrix structural constituent conferring tensile strength
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054588 Col9a1-001 protein_coding Mus_musculus 0 3166
ENSMUST00000088349 Col9a1-002 protein_coding Mus_musculus 0 2303
ENSMUST00000124600 Col9a1-004 processed_transcript Mus_musculus 0 763
ENSMUST00000147902 Col9a1-003 processed_transcript Mus_musculus 6e-31 141

Loading