C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000368021 USF1-001 ENSG00000158773 9606 - 1:161039251-161045977 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000368021
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000368021 4.790±0.00 7.390±0.87 5.028±4.16 3.343±0.20 2.668±1.18 5.559±2.95 2.735±1.25 11.326±5.74 4.135±0.00 4.908±4.45 7.636±2.11 4.549±0.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000430 IC regulation of transcription from RNA polymerase II promoter by glucose
GO:0000432 ISS positive regulation of transcription from RNA polymerase II promoter by glucose
GO:0001666 IMP response to hypoxia
GO:0003677 IEA DNA binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IMP RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006006 IEA glucose metabolic process
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0009411 ISS response to UV
GO:0019086 IDA late viral transcription
GO:0019899 IPI enzyme binding
GO:0019901 IPI protein kinase binding
GO:0032869 IDA cellular response to insulin stimulus
GO:0042593 TAS glucose homeostasis
GO:0042803 TAS protein homodimerization activity
GO:0042826 IPI histone deacetylase binding
GO:0043425 IPI bHLH transcription factor binding
GO:0043565 IDA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0045990 TAS carbon catabolite regulation of transcription
GO:0046982 IPI protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0051918 IC negative regulation of fibrinolysis
GO:0055088 ISS lipid homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000161241 Usf1-001 protein_coding Mus_musculus 0 1688
ENSMUST00000167546 Usf1-201 protein_coding Mus_musculus 0 1594
ENSMUST00000160486 Usf1-002 protein_coding Mus_musculus 0 1227
ENSMUST00000001284 Usf1-003 nonsense_mediated_decay Mus_musculus 0 965
ENSMUST00000160335 Usf1-009 retained_intron Mus_musculus 0 937
ENSMUST00000119288 Gm12345-001 processed_pseudogene Mus_musculus 0 924
ENSMUST00000159207 Usf1-004 protein_coding Mus_musculus 0 717
ENSMUST00000159371 Usf1-007 retained_intron Mus_musculus 0 704
ENSMUST00000159929 Usf1-008 retained_intron Mus_musculus 0 344
ENSMUST00000161297 Usf1-006 processed_transcript Mus_musculus 0 272
ENSMUST00000159466 Usf1-005 retained_intron Mus_musculus 0 211

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