C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GTPase activating protein, beta subunit (non-catalytic)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397040 RALGAPB-006 ENSG00000170471 9606 + 20:38472900-38578859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonLiverOvaryPlacentaTestisENST00000397040
Transcript ID Adipose Adrenal Brain Colon Liver Ovary Placenta Testis
ENST00000397040 1.218±0.00 1.469±0.00 1.602±0.00 1.466±0.00 1.980±1.18 3.568±1.20 2.050±0.20 7.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081Y CIL_00081Y_0001 VISTA 20:38219747-38821106
CIL_0004O2 CIL_0004O2_0001 CGP 20:38472816-38588463

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005488 IEA binding
GO:0017123 ISS Ral GTPase activator activity
GO:0032859 ISS activation of Ral GTPase activity
GO:0046982 ISS protein heterodimerization activity
GO:0051056 IEA regulation of small GTPase mediated signal transduction
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109486 Ralgapb-001 protein_coding Mus_musculus 0 6741
ENSMUST00000046274 Ralgapb-201 protein_coding Mus_musculus 0 6663
ENSMUST00000109485 Ralgapb-009 protein_coding Mus_musculus 0 4693
ENSMUST00000141497 Ralgapb-002 protein_coding Mus_musculus 0 4261
ENSMUST00000173137 Ralgapb-007 processed_transcript Mus_musculus 0 2049
ENSMUST00000143394 Ralgapb-006 retained_intron Mus_musculus 0 2049
ENSMUST00000150789 Ralgapb-005 retained_intron Mus_musculus 0 610
ENSMUST00000150420 Ralgapb-004 retained_intron Mus_musculus 0 558
ENSMUST00000173458 Ralgapb-008 processed_transcript Mus_musculus 0 244

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