C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: secretogranin V (7B2 protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000413748 SCG5-002 ENSG00000166922 9606 + 15:32641676-32697098 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonOvaryPlacentaTestisENST00000413748
Transcript ID Brain Breast Colon Ovary Placenta Testis
ENST00000413748 61.558±31.91 0.154±0.00 0.568±0.14 3.602±4.04 0.499±0.00 4.510±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097N CIL_00097N_0001 VISTA 15:32499326-33100458
CIL_0005IJ CIL_0005IJ_0002 CGP 15:32641676-32745107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004857 ISS enzyme inhibitor activity
GO:0005515 IPI protein binding
GO:0005525 TAS GTP binding
GO:0005576 IEA extracellular region
GO:0006886 ISS intracellular protein transport
GO:0007218 IEA neuropeptide signaling pathway
GO:0016486 ISS peptide hormone processing
GO:0030141 ISS:IEA secretory granule
GO:0046883 ISS regulation of hormone secretion
GO:0051082 IDA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000024005 Scg5-001 protein_coding Mus_musculus 0 848
ENSDART00000114886 scg5-201 protein_coding Danio_rerio 0 248
ENSDART00000152906 scg5-002 protein_coding Danio_rerio 0 248
ENSDART00000045249 scg5-001 protein_coding Danio_rerio 0 248
ENSDART00000153237 scg5-003 retained_intron Danio_rerio 0 215

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