C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich repeat kinase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000430804 LRRK2-005 ENSG00000188906 9606 + 12:40295505-40369285 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000430804
Transcript ID Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000430804 0.583±0.00 0.725±0.46 0.262±0.00 2.321±0.00 0.296±0.00 1.877±0.00 0.338±0.02 0.421±0.39 0.091±0.02 0.355±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006R2 CIL_0006R2_0001 CGP 12:39755021-40369285

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060642 Lrrk2-001 protein_coding Mus_musculus 0 4150
ENSMUST00000140734 Lrrk2-002 processed_transcript Mus_musculus 0 2761
ENSMUST00000133743 Lrrk2-003 processed_transcript Mus_musculus 0 1596
ENSMUST00000137657 Lrrk2-004 retained_intron Mus_musculus 0 523
ENSMUST00000156900 Lrrk2-005 processed_transcript Mus_musculus 0 520
ENSMUST00000172797 Lrrk2-006 retained_intron Mus_musculus 0 213

Loading