C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493039 CSTF1-007 ENSG00000101138 9606 + 20:56392683-56404462 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000493039
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000493039 2.553±0.00 6.182±0.00 1.226±0.00 1.826±0.77 2.443±1.45 1.981±0.39 2.115±0.00 3.867±1.76 3.383±0.00 1.184±0.65 2.003±1.92 5.930±3.17 5.194±1.09 10.519±1.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0001 VISTA 20:56155251-56756351
CIL_0002PV CIL_0002PV_0001 CGP 20:56369389-56406369
CIL_0005JF CIL_0005JF_0001 CGP 20:56392371-56460387

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000116375 Cstf1-001 protein_coding Mus_musculus 0 1264
ENSMUST00000151511 Cstf1-002 protein_coding Mus_musculus 0 261

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