C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 54kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000515460 NUP54-008 ENSG00000138750 9606 - 4:76134176-76148377 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000515460
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000515460 3.377±0.00 6.007±0.00 6.900±0.00 8.720±0.00 3.667±0.00 10.079±0.00 16.697±0.00 2.144±0.00 7.428±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VL CIL_0008VL_0001 VISTA 4:76031495-76631676
CIL_00071G CIL_00071G_0001 CGP 4:76114659-76213893

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038514 Nup54-001 protein_coding Mus_musculus 0 725
ENSMUST00000161109 Gm15790-001 processed_pseudogene Mus_musculus 0 475

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