C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ataxin 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000538065 ATXN7-201 ENSG00000163635 9606 + 3:63898399-64003453 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000538065
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000538065 2.973±0.00 1.758±0.00 1.020±0.55 1.850±0.00 0.978±0.00 0.914±0.40 1.539±0.00 0.463±0.04 1.432±0.00 1.870±0.00 1.453±0.85 0.304±0.07 3.117±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008ES CIL_0008ES_0001 VISTA 3:63387152-63989110
CIL_00078B CIL_00078B_0001 CGP 3:63833870-64003462
CIL_00079H CIL_00079H_0001 CGP 3:63864557-64024010

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006997 TAS nucleus organization
GO:0007601 TAS visual perception
GO:0008219 IEA cell death
GO:0015630 IDA microtubule cytoskeleton
GO:0016578 IDA histone deubiquitination
GO:0042326 IEA negative regulation of phosphorylation
GO:0043569 IEA negative regulation of insulin-like growth factor receptor signaling pathway
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022257 Atxn7-201 protein_coding Mus_musculus 0 2800
ENSDART00000110499 protein_coding Danio_rerio 0.00000000000001 88
ENSMUST00000116615 Barx2-001 protein_coding Mus_musculus 0.0001 53

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