C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539397 RNASEL-201 ENSG00000135828 9606 - 1:182578121-182589256 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLungOvaryTestisENST00000539397
Transcript ID Adrenal Brain Breast Colon Heart Lung Ovary Testis
ENST00000539397 0.542±0.00 0.231±0.04 0.713±0.44 0.487±0.00 0.135±0.00 0.295±0.15 0.273±0.00 0.144±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IDA RNA binding
GO:0004521 NAS endoribonuclease activity
GO:0004540 IEA ribonuclease activity
GO:0004672 IEA protein kinase activity
GO:0005515 IPI:IEA protein binding
GO:0005524 IEA ATP binding
GO:0005575 ND cellular_component
GO:0005739 IEA mitochondrion
GO:0005829 TAS cytosol
GO:0006397 IEA mRNA processing
GO:0006468 NAS:IEA protein phosphorylation
GO:0009103 IEA lipopolysaccharide biosynthetic process
GO:0016020 IEA membrane
GO:0016772 IEA transferase activity, transferring phosphorus-containing groups
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0045071 IDA negative regulation of viral genome replication
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051607 IDA defense response to virus
GO:0060337 TAS type I interferon signaling pathway
GO:0090502 NAS RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183241 Rnasel-004 protein_coding Mus_musculus 0 894
ENSMUST00000182722 Rnasel-006 protein_coding Mus_musculus 0 894
ENSMUST00000086209 Rnasel-003 protein_coding Mus_musculus 0 894
ENSMUST00000182131 Rnasel-005 retained_intron Mus_musculus 0 891

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