C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: poly(rC) binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546463 PCBP2-028 ENSG00000197111 9606 + 12:53452325-53479683 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000546463
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000546463 216.028±0.00 143.888±0.00 23.456±0.00 120.659±0.00 99.470±52.11 121.607±94.22 61.958±49.40 108.228±82.18 65.427±15.70 227.696±0.00 91.453±71.77 145.957±86.76 155.056±28.73 229.619±38.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_00033G CIL_00033G_0002 CGP 12:53452102-53500063

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003677 IEA DNA binding
GO:0003723 IEA:IDA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016020 IDA membrane
GO:0016071 NAS mRNA metabolic process
GO:0019899 IPI enzyme binding
GO:0030529 IEA ribonucleoprotein complex
GO:0031625 IPI ubiquitin protein ligase binding
GO:0032480 TAS negative regulation of type I interferon production
GO:0043161 IMP proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0045087 TAS innate immune response
GO:0050687 IMP negative regulation of defense response to virus
GO:0051607 IEA defense response to virus
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077037 Pcbp2-201 protein_coding Mus_musculus 0 2337
ENSMUST00000078404 Pcbp2-202 protein_coding Mus_musculus 0 1515
ENSMUST00000108838 Pcbp2-203 protein_coding Mus_musculus 0 1138
ENSMUST00000053015 Pcbp1-001 protein_coding Mus_musculus 0 833
ENSMUST00000119050 Gm12186-001 processed_pseudogene Mus_musculus 0 379
ENSMUST00000023812 Map3k12-002 protein_coding Mus_musculus 0 366

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