C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fermitin family member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000553373 FERMT2-003 ENSG00000073712 9606 - 14:52858377-52950568 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000553373
Transcript ID Bladder Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000553373 1.571±0.00 3.854±0.00 2.789±0.00 3.070±0.00 7.319±0.00 4.912±0.00 1.264±0.00 9.589±0.00 3.112±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005GL CIL_0005GL_0001 CGP 14:52775194-52952435
CIL_0005GE CIL_0005GE_0001 CGP 14:52857268-53153282

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005547 IDA phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0005925 IDA focal adhesion
GO:0007160 ISS cell-matrix adhesion
GO:0007179 IMP transforming growth factor beta receptor signaling pathway
GO:0007229 IMP integrin-mediated signaling pathway
GO:0008360 IEA regulation of cell shape
GO:0016055 IMP Wnt signaling pathway
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0033622 IMP integrin activation
GO:0034329 TAS cell junction assembly
GO:0034446 ISS substrate adhesion-dependent cell spreading
GO:0042995 IEA cell projection
GO:0048041 ISS focal adhesion assembly
GO:0072657 ISS protein localization to membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045905 Fermt2-001 protein_coding Mus_musculus 0 2507
ENSMUST00000150660 Fermt2-003 protein_coding Mus_musculus 0 725
ENSMUST00000141424 Fermt2-004 protein_coding Mus_musculus 0 723
ENSMUST00000149723 Fermt2-002 processed_transcript Mus_musculus 0 326

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