C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 111
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000561186 RNF111-004 ENSG00000157450 9606 + 15:59030823-59096424 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000561186
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000561186 1.546±0.00 1.361±0.00 1.801±0.00 2.172±0.00 2.231±0.00 2.284±0.93 1.246±0.00 1.270±0.00 2.891±0.36 1.712±1.25 1.877±0.25 2.646±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00024E CIL_00024E_0001 CGP 15:58865175-59097419

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IMP ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0006351 TAS transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007179 TAS transforming growth factor beta receptor signaling pathway
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0016874 IEA ligase activity
GO:0032184 IDA SUMO polymer binding
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0045944 TAS positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113595 Rnf111-202 protein_coding Mus_musculus 0 2560
ENSMUST00000034739 Rnf111-201 protein_coding Mus_musculus 0 2560

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