C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XVI, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000009194 col16a1 7955 - 19:40022486-40173904 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000086717 col16a1-201 40022486-40173904 protein_coding
  ENSDART00000136775 col16a1-001 40022655-40088567 protein_coding
  ENSDART00000151958 col16a1-002 40023464-40160711 protein_coding
  ENSDART00000152010 col16a1-004 40057186-40066240 protein_coding
  ENSDART00000152017 col16a1-003 40031386-40036172 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000086717ENSDART00000151958
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000086717 0.611±0.36 6.389±2.91 4.291±2.23 N/A 2.078±0.00
ENSDART00000151958 N/A 6.155±0.50 6.908±1.86 0.018±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PV CIL_0003PV_0001 CGP 19:40022486-40421547

Gene Ontology
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000084636 COL16A1 collagen, type XVI, alpha 1 protein_coding Homo_sapiens
ENSMUSG00000040690 Col16a1 collagen, type XVI, alpha 1 protein_coding Mus_musculus

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