C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SAM pointed domain containing ETS transcription factor
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000029930 SPDEF 7955 - 6:54235523-54245367 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000050483 SPDEF-201 54235523-54245367 protein_coding
  ENSDART00000123955 SPDEF-202 54235523-54245232 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000050483ENSDART00000123955
Transcript ID Brain Heart Kidney
ENSDART00000050483 0.120±0.00 N/A 0.216±0.00
ENSDART00000123955 0.307±0.00 0.153±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LR CIL_0004LR_0001 CGP 6:54142801-54245367
CIL_0004LT CIL_0004LT_0001 CGP 6:54235523-54303726

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000124664 SPDEF SAM pointed domain containing ETS transcription factor protein_coding Homo_sapiens
ENSMUSG00000024215 Spdef SAM pointed domain containing ets transcription factor protein_coding Mus_musculus

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