C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: poly-U binding splicing factor a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000032175 puf60a 7955 - 2:32371845-32389729 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000056645 puf60a-201 32371846-32385839 protein_coding
  ENSDART00000129931 puf60a-002 32383036-32389646 protein_coding
  ENSDART00000131823 puf60a-007 32388025-32389642 retained_intron
  ENSDART00000133311 puf60a-003 32383795-32389631 protein_coding
  ENSDART00000133660 puf60a-010 32372434-32384049 protein_coding
  ENSDART00000134539 puf60a-006 32383474-32389604 protein_coding
  ENSDART00000137616 puf60a-009 32382999-32384090 processed_transcript
  ENSDART00000138371 puf60a-005 32383795-32389605 protein_coding
  ENSDART00000139179 puf60a-011 32383465-32389624 protein_coding
  ENSDART00000144613 puf60a-001 32371845-32389729 protein_coding
  ENSDART00000145718 puf60a-008 32385760-32389595 retained_intron
  ENSDART00000145810 puf60a-004 32383037-32389624 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000056645ENSDART00000131823ENSDART00000144613ENSDART00000145718
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000056645 19.018±1.39 7.690±4.00 16.373±0.00 2.978±0.00 4.835±0.00
ENSDART00000131823 2.070±0.00 5.007±0.89 3.826±0.13 N/A N/A
ENSDART00000144613 5.653±1.66 3.636±0.64 N/A N/A 1.832±0.00
ENSDART00000145718 2.022±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FY CIL_0006FY_0001 CGP 2:32371845-32456410

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000179950 PUF60 poly-U binding splicing factor 60KDa protein_coding Homo_sapiens
ENSMUSG00000002524 Puf60 poly-U binding splicing factor 60 protein_coding Mus_musculus

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