C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box D5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000042485 foxd5 7955 + 8:31300987-31302138 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000062303 foxd5-001 31300987-31302138 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000062303
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000062303 0.548±0.51 0.057±0.00 0.198±0.00 0.038±0.00 0.113±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038H CIL_00038H_0001 CGP 8:31273742-31302138
CIL_00050R CIL_00050R_0001 CGP 8:31300987-31342659

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IBA negative regulation of transcription from RNA polymerase II promoter
GO:0001658 IBA branching involved in ureteric bud morphogenesis
GO:0001755 IBA neural crest cell migration
GO:0001822 IBA kidney development
GO:0003677 IEA DNA binding
GO:0003690 IBA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IBA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 IBA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-dependent
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0007422 IBA peripheral nervous system development
GO:0008134 IBA transcription factor binding
GO:0008301 IBA DNA binding, bending
GO:0030318 IBA melanocyte differentiation
GO:0032525 IMP somite rostral/caudal axis specification
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IBA positive regulation of transcription from RNA polymerase II promoter
GO:0048484 IBA enteric nervous system development
GO:0048485 IBA sympathetic nervous system development
GO:0048846 IBA axon extension involved in axon guidance
GO:0048937 IBA lateral line nerve glial cell development
GO:0050935 IBA iridophore differentiation
GO:0051090 IBA regulation of sequence-specific DNA binding transcription factor activity
GO:0051216 IBA cartilage development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000170122 FOXD4 forkhead box D4 protein_coding Homo_sapiens
ENSG00000184492 FOXD4L1 forkhead box D4-like 1 protein_coding Homo_sapiens
ENSG00000184659 FOXD4L4 forkhead box D4-like 4 protein_coding Homo_sapiens
ENSG00000187559 FOXD4L3 forkhead box D4-like 3 protein_coding Homo_sapiens
ENSG00000204779 FOXD4L5 forkhead box D4-like 5 protein_coding Homo_sapiens
ENSG00000273514 FOXD4L6 forkhead box D4-like 6 protein_coding Homo_sapiens
ENSMUSG00000051490 Foxd4 forkhead box D4 protein_coding Mus_musculus

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