C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 228, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000042936 fam228a 7955 + 20:25380042-25385592 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000063034 fam228a-001 25380042-25385592 protein_coding
  ENSDART00000134859 fam228a-004 25380051-25383237 retained_intron
  ENSDART00000140509 fam228a-003 25381184-25382056 retained_intron
  ENSDART00000146403 fam228a-002 25380046-25382536 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyMuscleENSDART00000063034ENSDART00000140509ENSDART00000146403
Transcript ID Brain Kidney Muscle
ENSDART00000063034 0.489±0.22 0.786±0.43 0.114±0.00
ENSDART00000140509 N/A 0.115±0.01 N/A
ENSDART00000146403 0.282±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000024 CIL_000024_0001 CGP 20:25380042-25465996

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000186453 FAM228A family with sequence similarity 228, member A protein_coding Homo_sapiens
ENSG00000219626 FAM228B family with sequence similarity 228, member B protein_coding Homo_sapiens
ENSG00000276087 RP11-507M3.1 protein_coding Homo_sapiens
ENSMUSG00000050545 Fam228b family with sequence similarity 228, member B protein_coding Mus_musculus
ENSMUSG00000079177 Fam228a family with sequence similarity 228, member A protein_coding Mus_musculus

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