C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: vinculin a
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000044968 vcla 7955 - 13:25435829-25508269 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000039828 vcla-201 25436245-25508156 protein_coding
  ENSDART00000110304 vcla-202 25436301-25508068 protein_coding
  ENSDART00000124167 vcla-001 25435829-25508269 protein_coding
  ENSDART00000133413 vcla-002 25445065-25446384 retained_intron

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverENSDART00000039828ENSDART00000110304ENSDART00000124167
Transcript ID Brain Heart Kidney Liver
ENSDART00000039828 0.558±0.00 N/A N/A N/A
ENSDART00000110304 N/A 2.041±0.03 N/A 0.077±0.00
ENSDART00000124167 N/A N/A 1.795±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0045214 IMP sarcomere organization
GO:0060047 IMP heart contraction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000035403 VCL vinculin protein_coding Homo_sapiens
ENSMUSG00000021823 Vcl vinculin protein_coding Mus_musculus

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