C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Usher syndrome 1C (autosomal recessive, severe)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000051876 ush1c 7955 + 25:23367293-23427572 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000121791 ush1c-001 23367293-23427572 protein_coding
  ENSDART00000129484 ush1c-002 23405404-23427572 protein_coding
  ENSDART00000131993 ush1c-003 23406979-23427572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyENSDART00000121791ENSDART00000131993
Transcript ID Brain Heart Kidney
ENSDART00000121791 0.346±0.17 0.047±0.01 3.442±0.55
ENSDART00000131993 0.476±0.23 0.024±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001964 IMP startle response
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0046549 IMP retinal cone cell development
GO:0050808 IMP synapse organization
GO:0060122 IMP inner ear receptor stereocilium organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000006611 USH1C Usher syndrome 1C (autosomal recessive, severe) protein_coding Homo_sapiens
ENSMUSG00000030838 Ush1c Usher syndrome 1C protein_coding Mus_musculus

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