C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSDARG00000061378 smg8 7955 - 10:36261926-36271940 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSDART00000087477 smg8-001 36261926-36271940 protein_coding

Danio rerio EnsemblZv9

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000087477
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000087477 4.619±2.47 6.965±4.26 7.920±2.81 0.959±0.00 4.112±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039L CIL_00039L_0001 CGP 10:36261926-36280961

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 IEA nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000167447 SMG8 SMG8 nonsense mediated mRNA decay factor protein_coding Homo_sapiens
ENSG00000265303 CTD-2510F5.6 Uncharacterized protein {ECO:0000313|Ensembl:ENSP00000464167} protein_coding Homo_sapiens
ENSMUSG00000020495 Smg8 smg-8 homolog, nonsense mediated mRNA decay factor (C. elegans) protein_coding Mus_musculus

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