C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 11
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000002919 SNX11 9606 + 17:48103357-48123074 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000359238 SNX11-003 48107585-48122743 protein_coding
  ENST00000393405 SNX11-001 48107558-48123074 protein_coding
  ENST00000452859 SNX11-002 48107549-48122135 protein_coding
  ENST00000577310 SNX11-012 48112566-48113563 retained_intron
  ENST00000578861 SNX11-008 48107549-48119008 processed_transcript
  ENST00000580219 SNX11-004 48107549-48121808 protein_coding
  ENST00000580875 SNX11-009 48107560-48112455 retained_intron
  ENST00000581298 SNX11-014 48103357-48119164 protein_coding
  ENST00000581705 SNX11-007 48107576-48121886 nonsense_mediated_decay
  ENST00000582104 SNX11-006 48107788-48121887 protein_coding
  ENST00000582481 SNX11-011 48111949-48119179 protein_coding
  ENST00000583320 SNX11-013 48107603-48121288 nonsense_mediated_decay
  ENST00000584335 SNX11-010 48107894-48121458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000359238ENST00000393405ENST00000452859ENST00000580219ENST00000580875ENST00000581298ENST00000581705ENST00000582104ENST00000583320ENST00000584335
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000359238 6.036±0.00 10.005±0.00 N/A 2.225±0.00 6.512±0.00 2.917±0.00 1.551±1.49 4.240±0.00 2.381±1.82 5.904±0.00 2.152±2.05 4.372±1.57 4.812±0.45 6.612±0.67
ENST00000393405 N/A N/A N/A 0.580±0.00 1.282±0.00 N/A 0.354±0.00 N/A N/A N/A N/A 1.556±0.00 1.887±0.00 1.710±0.00
ENST00000452859 N/A N/A N/A N/A N/A 1.396±0.00 N/A N/A 0.355±0.00 N/A N/A N/A N/A N/A
ENST00000580219 N/A N/A N/A N/A 0.531±0.00 N/A N/A N/A N/A N/A 1.612±0.00 N/A N/A N/A
ENST00000580875 N/A N/A N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000581298 N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.883±0.00 N/A 9.679±0.00 5.308±0.00 N/A
ENST00000581705 N/A N/A 0.242±0.00 N/A N/A N/A N/A N/A 0.287±0.00 N/A N/A N/A N/A 3.255±0.00
ENST00000582104 N/A N/A N/A 0.256±0.00 N/A N/A 0.510±0.00 N/A N/A N/A N/A 1.638±0.88 N/A N/A
ENST00000583320 N/A N/A 0.470±0.00 N/A N/A N/A N/A N/A N/A N/A 0.439±0.00 N/A N/A N/A
ENST00000584335 N/A N/A N/A N/A N/A N/A N/A 0.444±0.00 0.537±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RQ CIL_0007RQ_0001 VISTA 17:47700006-48306250
CIL_0007WA CIL_0007WA_0001 VISTA 17:47751636-48352675
CIL_00097B CIL_00097B_0001 VISTA 17:47849190-48450331

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005768 IDA endosome
GO:0006886 IEA:IBA intracellular protein transport
GO:0016020 IEA membrane
GO:0016050 IMP vesicle organization
GO:0035091 IEA phosphatidylinositol binding
GO:1901981 IDA phosphatidylinositol phosphate binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052522 snx11 sorting nexin 11 protein_coding Danio_rerio
ENSMUSG00000020876 Snx11 sorting nexin 11 protein_coding Mus_musculus

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