| Transcript ID | Brain | Colon |
|---|---|---|
| ENST00000585482 | 0.872±0.00 | 0.273±0.00 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Gene Info | |||||
|---|---|---|---|---|---|
| Description: | sterile alpha and TIR motif containing 1 | ||||
| Gene Accession | Gene Name | Tax ID | Strand | Position | Gene Biotype |
ENSG00000004139  |
SARM1 | 9606 | + |
17:28364356-28404049  |
protein_coding |
| Transcript Accession | Transcript Name | Position | Transcript Biotype | ||
| ENST00000379061 |
SARM1-002 | 28364356-28398135 | processed_transcript | ||
| ENST00000577870 |
SARM1-008 | 28385431-28396198 | retained_intron | ||
| ENST00000578128 |
SARM1-007 | 28385100-28396411 | protein_coding | ||
| ENST00000579593 |
SARM1-009 | 28388270-28396820 | protein_coding | ||
| ENST00000580711 |
SARM1-006 | 28387998-28395978 | retained_intron | ||
| ENST00000582323 |
SARM1-005 | 28384826-28388394 | nonsense_mediated_decay | ||
| ENST00000585453 |
SARM1-003 | 28384670-28398163 | retained_intron | ||
| ENST00000585482 |
SARM1-001 | 28371662-28404049 | protein_coding | ||
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0000FM | CIL_0000FM_0002 | CGP | 17:28364356-28404049 |
Gene Ontology |
||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0002224 | TAS | toll-like receptor signaling pathway |
| GO:0002756 | TAS | MyD88-independent toll-like receptor signaling pathway |
| GO:0005488 | IEA | binding |
| GO:0005515 | IEA | protein binding |
| GO:0005737 | ISS | cytoplasm |
| GO:0005739 | IDA | mitochondrion |
| GO:0005829 | TAS | cytosol |
| GO:0005874 | ISS | microtubule |
| GO:0007165 | IEA | signal transduction |
| GO:0009749 | IEA | response to glucose |
| GO:0015630 | IEA | microtubule cytoskeleton |
| GO:0030054 | IEA | cell junction |
| GO:0030425 | ISS | dendrite |
| GO:0031315 | IEA | extrinsic component of mitochondrial outer membrane |
| GO:0034138 | TAS | toll-like receptor 3 signaling pathway |
| GO:0034142 | TAS | toll-like receptor 4 signaling pathway |
| GO:0042981 | IEA | regulation of apoptotic process |
| GO:0045087 | TAS | innate immune response |
| GO:0045202 | ISS | synapse |
| GO:0048814 | ISS | regulation of dendrite morphogenesis |
| GO:1901214 | ISS | regulation of neuron death |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Description | Biotype | Species | |
|
ENSDARG00000010610
|
sarm1 | sterile alpha and TIR motif containing 1 | protein_coding | Danio_rerio | |
|
ENSMUSG00000050132
|
Sarm1 | sterile alpha and HEAT/Armadillo motif containing 1 | protein_coding | Mus_musculus | |
