C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: glycerophosphodiester phosphodiesterase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006007 GDE1 9606 - 16:19501689-19522145 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000353258 GDE1-001 19501689-19522145 protein_coding
  ENST00000563645 GDE1-005 19503101-19505132 retained_intron
  ENST00000564172 GDE1-002 19502383-19522123 nonsense_mediated_decay
  ENST00000569773 GDE1-003 19507685-19521588 protein_coding
  ENST00000569899 GDE1-004 19503861-19517168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000353258ENST00000563645ENST00000564172ENST00000569899
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000353258 2.199±0.00 2.528±0.00 0.915±0.00 2.911±0.88 3.187±1.85 2.190±0.00 2.824±1.71 3.149±0.00 1.473±0.00 3.090±0.33 0.948±0.34 4.655±1.23 7.542±0.53 3.606±0.89
ENST00000563645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.757±0.00 N/A 8.748±0.00 8.496±0.00
ENST00000564172 N/A 8.703±0.00 0.904±0.00 10.870±6.63 4.121±0.00 11.724±5.53 15.205±11.39 8.322±5.12 4.665±2.32 11.731±0.00 2.812±0.05 8.554±4.94 13.877±3.56 12.717±0.00
ENST00000569899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.846±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MY CIL_0006MY_0001 CGP 16:19410496-19522145
CIL_0006MZ CIL_0006MZ_0001 CGP 16:19501689-19553408

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0006071 IEA glycerol metabolic process
GO:0006629 IEA:TAS lipid metabolic process
GO:0008081 IEA phosphoric diester hydrolase activity
GO:0008889 IEA:TAS glycerophosphodiester phosphodiesterase activity
GO:0016021 TAS integral component of membrane
GO:0046872 IEA metal ion binding
GO:0047395 IEA glycerophosphoinositol glycerophosphodiesterase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000055108 gde1 glycerophosphodiester phosphodiesterase 1 protein_coding Danio_rerio
ENSMUSG00000033917 Gde1 glycerophosphodiester phosphodiesterase 1 protein_coding Mus_musculus

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