C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: spermatogenesis associated 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000006282 SPATA20 9606 + 17:50543058-50555852 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000006658 SPATA20-001 50547089-50555852 protein_coding
  ENST00000356488 SPATA20-004 50547126-50555852 protein_coding
  ENST00000393244 SPATA20-201 50547201-50555850 protein_coding
  ENST00000502911 SPATA20-010 50547153-50549329 nonsense_mediated_decay
  ENST00000503063 SPATA20-008 50548013-50555852 retained_intron
  ENST00000503127 SPATA20-003 50547127-50555850 nonsense_mediated_decay
  ENST00000504265 SPATA20-022 50550108-50551384 retained_intron
  ENST00000504271 SPATA20-012 50550734-50551939 retained_intron
  ENST00000504334 SPATA20-002 50543058-50555850 nonsense_mediated_decay
  ENST00000505085 SPATA20-009 50547129-50548618 nonsense_mediated_decay
  ENST00000505336 SPATA20-018 50548060-50548814 retained_intron
  ENST00000505456 SPATA20-014 50547184-50549304 nonsense_mediated_decay
  ENST00000505559 SPATA20-005 50547205-50550891 nonsense_mediated_decay
  ENST00000505656 SPATA20-021 50548883-50550851 retained_intron
  ENST00000508528 SPATA20-024 50550272-50551985 nonsense_mediated_decay
  ENST00000508598 SPATA20-015 50547205-50548581 retained_intron
  ENST00000510917 SPATA20-011 50547161-50548863 nonsense_mediated_decay
  ENST00000511347 SPATA20-020 50548850-50551072 nonsense_mediated_decay
  ENST00000511605 SPATA20-013 50547180-50548172 retained_intron
  ENST00000511845 SPATA20-017 50547209-50548902 retained_intron
  ENST00000511937 SPATA20-006 50547999-50555852 processed_transcript
  ENST00000512181 SPATA20-007 50548019-50550802 retained_intron
  ENST00000512416 SPATA20-019 50548076-50549409 retained_intron
  ENST00000513618 SPATA20-025 50550400-50551108 retained_intron
  ENST00000515526 SPATA20-016 50547209-50548703 retained_intron
  ENST00000515619 SPATA20-023 50550212-50551669 retained_intron
  ENST00000619622 SPATA20-202 50547089-50555850 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000006658ENST00000356488ENST00000393244ENST00000503063ENST00000503127ENST00000504265ENST00000505456ENST00000505656ENST00000508528ENST00000510917ENST00000511347ENST00000511937ENST00000512181ENST00000515619
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000006658 5.262±0.00 6.983±0.00 N/A 5.165±3.82 N/A 1.690±0.00 5.625±3.59 11.272±0.00 2.197±0.00 8.387±0.00 1.450±0.00 10.534±6.03 9.398±0.00 N/A
ENST00000356488 N/A N/A 3.017±0.00 3.772±0.00 N/A N/A 2.250±0.00 N/A N/A 0.963±0.00 3.178±0.00 18.937±0.08 5.493±0.00 53.179±0.00
ENST00000393244 3.646±0.00 11.517±0.00 N/A 12.602±0.00 9.610±6.90 3.067±0.00 8.492±0.00 N/A 4.851±0.00 N/A 8.073±0.00 8.970±0.00 N/A 33.960±0.00
ENST00000503063 N/A N/A N/A 0.693±0.00 N/A 1.311±0.29 N/A 4.417±0.00 0.863±0.00 N/A N/A 6.852±1.38 N/A 9.167±2.19
ENST00000503127 N/A N/A N/A N/A 3.519±0.00 3.073±0.00 6.094±0.00 3.060±0.00 1.464±0.00 5.303±0.00 N/A 12.014±2.99 7.539±4.72 N/A
ENST00000504265 N/A N/A N/A N/A 3.503±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505456 N/A N/A N/A N/A N/A N/A N/A N/A 2.113±0.00 N/A N/A N/A N/A N/A
ENST00000505656 N/A N/A N/A N/A N/A 4.727±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508528 N/A N/A N/A N/A N/A N/A N/A 10.442±0.00 N/A N/A N/A N/A N/A N/A
ENST00000510917 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.341±0.00 N/A N/A N/A N/A
ENST00000511347 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 37.967±0.00
ENST00000511937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.560±0.00
ENST00000512181 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.737±0.00 N/A N/A
ENST00000515619 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.335±0.00 N/A 5.167±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088W CIL_00088W_0001 VISTA 17:49956976-50560219
CIL_0004X2 CIL_0004X2_0002 CGP 17:50543058-50627474

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IEA protein binding
GO:0005576 IEA extracellular region
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008152 IEA metabolic process
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000013880 spata20 spermatogenesis associated 20 protein_coding Danio_rerio
ENSMUSG00000020867 Spata20 spermatogenesis associated 20 protein_coding Mus_musculus

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