C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000007216 SLC13A2 9606 + 17:28473293-28497781 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000314669 SLC13A2-001 28473293-28497781 protein_coding
  ENST00000444914 SLC13A2-002 28473293-28497778 protein_coding
  ENST00000459818 SLC13A2-005 28473738-28497778 nonsense_mediated_decay
  ENST00000541739 SLC13A2-006 28473738-28494076 retained_intron
  ENST00000545060 SLC13A2-201 28473646-28493903 protein_coding
  ENST00000577903 SLC13A2-003 28473692-28497318 nonsense_mediated_decay
  ENST00000579281 SLC13A2-004 28473738-28497694 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonKidneyLiverLungOvaryTestisENST00000314669ENST00000459818ENST00000541739ENST00000545060ENST00000577903ENST00000579281
Transcript ID Bladder Brain Breast Colon Kidney Liver Lung Ovary Testis
ENST00000314669 5.855±0.00 N/A 0.661±0.00 0.686±0.00 N/A N/A N/A N/A 0.066±0.00
ENST00000459818 N/A 0.017±0.00 2.693±0.00 0.192±0.00 N/A N/A N/A N/A 0.317±0.00
ENST00000541739 N/A N/A N/A N/A N/A 0.108±0.00 N/A N/A N/A
ENST00000545060 N/A 0.037±0.00 N/A N/A N/A N/A 0.038±0.00 N/A N/A
ENST00000577903 N/A N/A N/A N/A N/A N/A N/A 0.263±0.00 0.028±0.00
ENST00000579281 N/A N/A N/A N/A 2.677±0.00 0.015±0.00 0.076±0.03 0.044±0.00 N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006810 TAS transport
GO:0006814 IEA sodium ion transport
GO:0006835 TAS dicarboxylic acid transport
GO:0015361 TAS low-affinity sodium:dicarboxylate symporter activity
GO:0016020 TAS:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0055085 TAS:IEA transmembrane transport
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053853 slc13a2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 protein_coding Danio_rerio
ENSMUSG00000001095 Slc13a2 solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2 protein_coding Mus_musculus

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