C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000008513 ST3GAL1 9606 - 8:133454848-133571940 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000399640 ST3GAL1-201 133454848-133571940 protein_coding
  ENST00000517668 ST3GAL1-005 133464931-133571925 protein_coding
  ENST00000518298 ST3GAL1-002 133476029-133571888 processed_transcript
  ENST00000519435 ST3GAL1-006 133476029-133570379 processed_transcript
  ENST00000519924 ST3GAL1-010 133475877-133489700 protein_coding
  ENST00000520020 ST3GAL1-007 133476143-133499421 processed_transcript
  ENST00000521180 ST3GAL1-001 133454853-133571925 protein_coding
  ENST00000521627 ST3GAL1-014 133488082-133489633 processed_transcript
  ENST00000522204 ST3GAL1-012 133465642-133475934 retained_intron
  ENST00000522285 ST3GAL1-004 133566982-133571746 processed_transcript
  ENST00000522652 ST3GAL1-003 133458945-133571849 protein_coding
  ENST00000522873 ST3GAL1-013 133476523-133571926 processed_transcript
  ENST00000523634 ST3GAL1-011 133475809-133489640 protein_coding
  ENST00000523854 ST3GAL1-008 133464778-133499383 protein_coding
  ENST00000523855 ST3GAL1-009 133475884-133499361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000399640ENST00000521180ENST00000522652
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000399640 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.597±0.00 N/A N/A N/A N/A
ENST00000521180 1.271±0.00 2.222±0.00 N/A 0.657±0.00 0.869±0.01 1.894±0.00 10.168±0.00 1.369±0.00 N/A N/A 0.851±0.00 2.959±2.62 3.837±0.30 0.210±0.00
ENST00000522652 N/A N/A 2.494±0.00 N/A 1.303±0.00 0.942±0.00 2.910±0.00 8.603±0.00 3.394±0.00 N/A N/A 1.563±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094T CIL_00094T_0001 VISTA 8:133226403-133828417
CIL_0004PW CIL_0004PW_0001 CGP 8:133237171-133571940
CIL_0008CD CIL_0008CD_0001 VISTA 8:133368805-133970973
CIL_0004PT CIL_0004PT_0001 CGP 8:133454848-134713049

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003836 ISS beta-galactoside (CMP) alpha-2,3-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0005975 TAS carbohydrate metabolic process
GO:0006054 ISS N-acetylneuraminate metabolic process
GO:0006464 TAS cellular protein modification process
GO:0006468 IEA protein phosphorylation
GO:0006486 IEA protein glycosylation
GO:0006487 ISS protein N-linked glycosylation
GO:0008373 IEA sialyltransferase activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018146 TAS keratan sulfate biosynthetic process
GO:0030173 IEA integral component of Golgi membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0097503 IEA:ISS sialylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000013846 St3gal1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein_coding Mus_musculus

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