C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein 216
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000011275 RNF216 9606 - 7:5620047-5781739 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000389900 RNF216-004 5622695-5761138 nonsense_mediated_decay
  ENST00000389902 RNF216-003 5622607-5781739 protein_coding
  ENST00000411812 RNF216-006 5741579-5781646 nonsense_mediated_decay
  ENST00000416985 RNF216-005 5761011-5781620 protein_coding
  ENST00000425013 RNF216-001 5620047-5781696 protein_coding
  ENST00000469375 RNF216-010 5622927-5650015 processed_transcript
  ENST00000476345 RNF216-007 5761088-5780292 processed_transcript
  ENST00000479541 RNF216-008 5729530-5739492 retained_intron
  ENST00000484458 RNF216-009 5641348-5713441 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000389900ENST00000389902ENST00000425013ENST00000484458
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000389900 N/A N/A 0.810±0.00 2.188±0.00 2.952±0.00 N/A 0.996±0.00 N/A 2.824±0.00 3.220±0.00 1.778±0.00 1.810±0.00 N/A N/A
ENST00000389902 N/A N/A 2.245±0.00 2.117±0.00 3.925±0.00 3.095±0.00 0.869±0.00 2.022±0.46 4.166±0.00 3.038±1.07 2.235±0.00 5.516±0.00 1.843±0.68 7.611±1.32
ENST00000425013 5.633±0.00 5.001±0.00 0.742±0.00 2.038±0.35 2.029±0.81 3.679±2.50 3.277±2.62 1.844±0.89 2.333±0.00 1.097±0.33 2.770±0.85 5.877±5.05 3.707±1.19 10.944±0.37
ENST00000484458 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 60.736±0.00 36.753±0.00 173.398±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000854 CIL_000854_0001 VISTA 7:5332287-5936913
CIL_00027J CIL_00027J_0002 CGP 7:5592823-5781739

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0016032 IEA viral process
GO:0016874 IEA ligase activity
GO:0032648 IDA regulation of interferon-beta production
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050691 IDA regulation of defense response to virus by host
GO:0070936 IDA protein K48-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087893 rnf216 ring finger protein 216 protein_coding Danio_rerio
ENSMUSG00000045078 Rnf216 ring finger protein 216 protein_coding Mus_musculus

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