C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: non-SMC condensin II complex, subunit H2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000025770 NCAPH2 9606 + 22:50508216-50523472 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000299821 NCAPH2-009 50508260-50523472 protein_coding
  ENST00000395698 NCAPH2-003 50508243-50519752 protein_coding
  ENST00000395701 NCAPH2-006 50508244-50523472 protein_coding
  ENST00000418794 NCAPH2-004 50508259-50518058 nonsense_mediated_decay
  ENST00000420993 NCAPH2-001 50508216-50523472 protein_coding
  ENST00000518394 NCAPH2-013 50508245-50518276 nonsense_mediated_decay
  ENST00000520297 NCAPH2-014 50519547-50522418 processed_transcript
  ENST00000522048 NCAPH2-015 50520410-50522569 retained_intron
  ENST00000522304 NCAPH2-016 50522525-50523471 protein_coding
  ENST00000523045 NCAPH2-012 50508246-50521589 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000299821ENST00000395698ENST00000395701ENST00000420993ENST00000518394ENST00000520297ENST00000522304ENST00000523045
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000299821 3.626±0.00 6.882±0.00 N/A N/A N/A N/A 0.417±0.00 6.537±5.53 1.227±0.00 3.809±0.00 N/A 5.892±0.00 5.004±0.00 19.565±0.00
ENST00000395698 N/A N/A 0.607±0.00 N/A N/A N/A N/A N/A N/A 2.906±0.00 N/A N/A N/A N/A
ENST00000395701 N/A N/A N/A N/A 3.454±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000420993 7.358±0.00 11.798±0.00 N/A 5.703±4.66 10.197±0.00 5.542±4.59 6.252±0.00 0.432±0.00 2.923±0.00 N/A 10.933±0.00 20.935±6.41 19.963±3.81 25.158±1.35
ENST00000518394 N/A N/A N/A N/A N/A N/A N/A 1.236±0.00 N/A N/A N/A N/A N/A N/A
ENST00000520297 N/A N/A 0.948±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 17.833±0.00 15.496±0.00 40.396±0.00
ENST00000522304 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.888±0.00 N/A 17.652±0.00 N/A N/A
ENST00000523045 N/A N/A N/A 8.779±0.00 N/A N/A 4.023±0.00 N/A N/A 5.518±0.00 3.067±2.51 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026C CIL_00026C_0001 CGP 22:50502949-50523472
CIL_0000V1 CIL_0000V1_0002 CGP 22:50508216-50526439

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0016020 IDA membrane
GO:0030261 IEA chromosome condensation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033757 ncaph2 non-SMC condensin II complex, subunit H2 protein_coding Danio_rerio
ENSMUSG00000008690 Ncaph2 non-SMC condensin II complex, subunit H2 protein_coding Mus_musculus
ENSMUSG00000090957 Gm7535 predicted gene 7535 protein_coding Mus_musculus

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