C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: AT rich interactive domain 4A (RBP1-like)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000032219 ARID4A 9606 + 14:58298385-58373887 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000348476 ARID4A-201 58298504-58373730 protein_coding
  ENST00000355431 ARID4A-001 58298385-58373733 protein_coding
  ENST00000395168 ARID4A-003 58298556-58372226 protein_coding
  ENST00000417477 ARID4A-009 58331287-58365300 protein_coding
  ENST00000424658 ARID4A-006 58299331-58304990 protein_coding
  ENST00000431317 ARID4A-002 58299537-58373887 protein_coding
  ENST00000431612 ARID4A-004 58298559-58306112 nonsense_mediated_decay
  ENST00000445108 ARID4A-005 58298588-58330169 protein_coding
  ENST00000466065 ARID4A-008 58365475-58371960 retained_intron
  ENST00000469635 ARID4A-007 58353454-58360991 retained_intron
  ENST00000553355 ARID4A-010 58351297-58359172 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000348476ENST00000355431ENST00000395168ENST00000417477ENST00000431317ENST00000445108
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000348476 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.172±0.00 N/A N/A N/A
ENST00000355431 1.872±0.00 2.450±0.00 2.018±1.28 N/A 2.186±0.09 0.798±0.67 2.081±0.06 1.682±1.06 1.106±0.08 0.305±0.06 2.301±0.37 0.846±0.52 2.495±0.60
ENST00000395168 1.639±0.00 1.495±0.00 1.417±0.00 1.441±0.00 0.993±0.00 0.924±0.00 0.681±0.00 N/A N/A 0.475±0.00 3.205±0.00 1.799±1.41 1.700±0.90
ENST00000417477 N/A N/A 1.402±0.00 N/A N/A N/A N/A N/A N/A N/A 7.019±0.00 6.902±0.00 8.553±0.00
ENST00000431317 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.397±0.00 N/A N/A
ENST00000445108 N/A N/A N/A N/A N/A N/A 3.626±0.00 N/A 2.809±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004LX CIL_0004LX_0001 CGP 14:58244831-58373887
CIL_0001K9 CIL_0001K9_0001 CGP 14:58298385-58408701

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0006349 IEA regulation of gene expression by genetic imprinting
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007283 IEA spermatogenesis
GO:0017053 IDA transcriptional repressor complex
GO:0034773 IEA histone H4-K20 trimethylation
GO:0036124 IEA histone H3-K9 trimethylation
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048821 IEA erythrocyte development
GO:0080182 IEA histone H3-K4 trimethylation
GO:0097368 IEA establishment of Sertoli cell barrier

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043873 arid4a AT rich interactive domain 4A (RBP1-like) protein_coding Danio_rerio
ENSMUSG00000048118 Arid4a AT rich interactive domain 4A (RBP1-like) protein_coding Mus_musculus

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