C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tumor suppressing subtransferable candidate 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000032389 TSSC1 9606 - 2:3188925-3377882 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000382125 TSSC1-001 3188925-3377882 protein_coding
  ENST00000398659 TSSC1-003 3188925-3377830 protein_coding
  ENST00000406835 TSSC1-006 3214149-3377793 nonsense_mediated_decay
  ENST00000435721 TSSC1-009 3194083-3377781 nonsense_mediated_decay
  ENST00000441271 TSSC1-007 3192414-3377800 protein_coding
  ENST00000443925 TSSC1-004 3207804-3377790 protein_coding
  ENST00000444776 TSSC1-010 3257351-3377817 protein_coding
  ENST00000455162 TSSC1-008 3189460-3377788 nonsense_mediated_decay
  ENST00000462515 TSSC1-011 3214186-3282826 processed_transcript
  ENST00000463662 TSSC1-005 3194012-3377470 processed_transcript
  ENST00000470625 TSSC1-015 3196911-3214452 retained_intron
  ENST00000478754 TSSC1-002 3188925-3320544 processed_transcript
  ENST00000482570 TSSC1-012 3194083-3257559 retained_intron
  ENST00000496433 TSSC1-014 3189325-3194391 retained_intron

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000382125ENST00000398659ENST00000406835ENST00000435721ENST00000441271ENST00000443925ENST00000455162ENST00000470625ENST00000478754ENST00000482570ENST00000496433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000382125 2.421±0.00 7.595±0.00 N/A 6.812±1.63 4.345±0.00 1.764±0.93 2.057±1.80 3.062±2.49 3.541±0.00 1.275±0.00 N/A 3.497±1.93 6.235±4.90 4.876±0.90
ENST00000398659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 2.884±0.00 N/A N/A
ENST00000406835 N/A N/A 1.174±0.00 N/A N/A 0.784±0.00 0.445±0.00 1.398±0.00 1.192±0.00 0.877±0.00 N/A N/A N/A N/A
ENST00000435721 N/A N/A 2.039±0.00 N/A N/A N/A N/A N/A 0.787±0.00 N/A 3.092±0.00 N/A N/A N/A
ENST00000441271 2.039±0.00 N/A N/A 16.042±0.00 5.198±0.00 3.928±1.93 N/A 6.532±0.00 N/A N/A 1.386±0.00 3.751±1.94 2.925±0.00 6.873±1.72
ENST00000443925 N/A N/A N/A N/A N/A N/A 0.104±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000455162 N/A N/A N/A 3.532±0.00 N/A N/A N/A N/A N/A 1.028±0.00 N/A 2.237±0.00 N/A N/A
ENST00000470625 N/A N/A N/A N/A N/A N/A N/A 3.702±0.00 N/A N/A N/A N/A N/A N/A
ENST00000478754 N/A N/A N/A N/A N/A N/A N/A N/A 0.414±0.00 N/A N/A N/A N/A N/A
ENST00000482570 N/A N/A N/A N/A N/A N/A N/A 2.017±0.00 N/A N/A 0.818±0.00 N/A N/A N/A
ENST00000496433 N/A N/A N/A N/A 1.920±0.00 N/A 0.856±0.00 N/A N/A N/A N/A N/A N/A 4.956±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EQ CIL_0008EQ_0001 VISTA 2:2964425-3567078

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000043417 tssc1 tumor suppressing subtransferable candidate 1 protein_coding Danio_rerio
ENSMUSG00000036613 Tssc1 tumor suppressing subtransferable candidate 1 protein_coding Mus_musculus

Loading