C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: reticulocalbin 1, EF-hand calcium binding domain
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049449 RCN1 9606 + 11:31812391-32105755 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000054950 RCN1-002 32090904-32105755 protein_coding
  ENST00000506388 RCN1-011 31816566-31887043 processed_transcript
  ENST00000527337 RCN1-007 32100547-32104684 nonsense_mediated_decay
  ENST00000528630 RCN1-008 32104386-32105532 protein_coding
  ENST00000530146 RCN1-012 31885774-31917941 processed_transcript
  ENST00000530348 RCN1-013 31812391-32100594 protein_coding
  ENST00000531345 RCN1-004 32101995-32105531 retained_intron
  ENST00000532474 RCN1-006 32100532-32104602 processed_transcript
  ENST00000532721 RCN1-005 32091610-32098458 protein_coding
  ENST00000532942 RCN1-001 31816384-32104665 protein_coding
  ENST00000533898 RCN1-003 32096534-32105536 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000054950ENST00000528630ENST00000530348ENST00000532721ENST00000532942ENST00000533898
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000054950 10.534±0.00 N/A 1.064±0.00 1.870±0.01 5.646±1.79 5.630±1.87 2.592±0.84 6.032±2.47 3.690±0.00 4.582±0.92 3.287±1.73 18.629±10.64 51.938±10.33 6.538±2.23
ENST00000528630 N/A 37.880±0.00 N/A N/A 18.043±0.00 N/A N/A 25.432±0.00 14.500±0.00 22.129±0.00 8.510±0.00 N/A N/A 32.778±0.00
ENST00000530348 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.232±0.00 N/A N/A N/A N/A
ENST00000532721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.767±0.00 N/A N/A N/A
ENST00000532942 N/A N/A 3.095±0.00 4.676±1.20 9.619±0.00 2.961±0.00 0.881±0.00 10.277±0.00 N/A 5.476±0.00 N/A 13.675±0.00 29.458±0.00 6.531±0.00
ENST00000533898 N/A N/A 0.485±0.00 N/A N/A N/A 0.423±0.00 N/A N/A 1.794±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KI CIL_0008KI_0001 VISTA 11:31301275-31902571
CIL_0007UQ CIL_0007UQ_0001 VISTA 11:31363809-31965336
CIL_0008UP CIL_0008UP_0001 VISTA 11:31463875-32065678
CIL_0007XG CIL_0007XG_0001 VISTA 11:31494904-32096873
CIL_000914 CIL_000914_0001 VISTA 11:31574048-32177516
CIL_0007JA CIL_0007JA_0002 UCNEbase 11:31639896-31819124
CIL_0007PY CIL_0007PY_0001 VISTA 11:31667627-32268476
CIL_00096J CIL_00096J_0001 VISTA 11:31730852-32331950

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0043010 IEA camera-type eye development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070006 rcn1 reticulocalbin 1, EF-hand calcium binding domain protein_coding Danio_rerio
ENSMUSG00000005973 Rcn1 reticulocalbin 1 protein_coding Mus_musculus

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