C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pentatricopeptide repeat domain 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000049883 PTCD2 9606 + 5:72320367-72360225 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000308077 PTCD2-003 72320373-72360225 nonsense_mediated_decay
  ENST00000380639 PTCD2-001 72320367-72359295 protein_coding
  ENST00000460837 PTCD2-004 72335559-72358838 processed_transcript
  ENST00000486995 PTCD2-002 72320373-72359228 nonsense_mediated_decay
  ENST00000493283 PTCD2-005 72320399-72352646 processed_transcript
  ENST00000503315 PTCD2-007 72320398-72358912 nonsense_mediated_decay
  ENST00000503868 PTCD2-006 72320376-72359233 protein_coding
  ENST00000510676 PTCD2-011 72320388-72358384 protein_coding
  ENST00000511752 PTCD2-010 72320373-72338671 nonsense_mediated_decay
  ENST00000515198 PTCD2-008 72320368-72352757 nonsense_mediated_decay
  ENST00000536805 PTCD2-201 72320367-72359352 protein_coding
  ENST00000543322 PTCD2-202 72320367-72359352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartKidneyLiverLungOvaryENST00000308077ENST00000380639
Transcript ID Bladder Brain Colon Heart Kidney Liver Lung Ovary
ENST00000308077 N/A N/A 3.725±0.00 N/A N/A 3.965±0.00 1.570±0.00 N/A
ENST00000380639 1.545±0.00 3.588±0.00 N/A 1.566±0.00 1.345±0.00 N/A 1.913±0.00 3.026±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001822 IEA kidney development
GO:0001889 IEA liver development
GO:0005739 IDA mitochondrion
GO:0006397 IEA mRNA processing
GO:0007005 IEA mitochondrion organization
GO:0007507 IEA heart development
GO:0010468 IEA regulation of gene expression
GO:0044822 IDA poly(A) RNA binding
GO:0048747 IEA muscle fiber development
GO:0050684 ISS regulation of mRNA processing
GO:0055010 IEA ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000035391 ptcd2 pentatricopeptide repeat domain 2 protein_coding Danio_rerio
ENSMUSG00000021650 Ptcd2 pentatricopeptide repeat domain 2 protein_coding Mus_musculus

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