C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: forkhead box N3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000053254 FOXN3 9606 - 14:89124871-89619149 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261302 FOXN3-201 89161361-89412492 protein_coding
  ENST00000345097 FOXN3-003 89156172-89619130 protein_coding
  ENST00000553353 FOXN3-017 89190382-89401665 protein_coding
  ENST00000553840 FOXN3-009 89162878-89412025 protein_coding
  ENST00000553904 FOXN3-006 89412313-89494185 protein_coding
  ENST00000554005 FOXN3-016 89280950-89412035 nonsense_mediated_decay
  ENST00000555010 FOXN3-015 89180759-89223342 processed_transcript
  ENST00000555034 FOXN3-007 89412197-89494051 protein_coding
  ENST00000555353 FOXN3-001 89162362-89619149 protein_coding
  ENST00000555658 FOXN3-010 89263593-89350791 processed_transcript
  ENST00000555855 FOXN3-005 89350728-89619137 protein_coding
  ENST00000556541 FOXN3-013 89180756-89185873 processed_transcript
  ENST00000556916 FOXN3-012 89230728-89412058 protein_coding
  ENST00000557258 FOXN3-004 89161385-89417112 protein_coding
  ENST00000557261 FOXN3-008 89349533-89351321 processed_transcript
  ENST00000557496 FOXN3-014 89180788-89184154 processed_transcript
  ENST00000557572 FOXN3-018 89124871-89180744 protein_coding
  ENST00000557718 FOXN3-011 89180790-89412017 nonsense_mediated_decay
  ENST00000615335 FOXN3-202 89161400-89412476 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261302ENST00000345097ENST00000555353ENST00000615335
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261302 N/A N/A N/A N/A 2.963±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000345097 5.271±0.00 4.276±0.00 14.636±6.60 6.643±0.00 6.678±0.00 3.401±0.00 1.746±0.00 7.806±0.00 5.900±0.00 2.382±0.07 4.438±3.32 7.876±3.39
ENST00000555353 N/A N/A N/A N/A N/A N/A N/A 6.881±0.00 6.647±0.00 N/A N/A N/A
ENST00000615335 N/A N/A 7.275±0.00 4.809±0.00 N/A N/A 6.998±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KI CIL_0004KI_0001 CGP 14:88824153-89619149
CIL_0008PB CIL_0008PB_0001 VISTA 14:89047550-89650536
CIL_0008OO CIL_0008OO_0001 VISTA 14:89048358-89650633
CIL_0005C7 CIL_0005C7_0001 CGP 14:89124871-89954777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IC nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007095 IGI mitotic G2 DNA damage checkpoint
GO:0008022 IPI protein C-terminus binding
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012833 foxn3 forkhead box N3 protein_coding Danio_rerio
ENSMUSG00000033713 Foxn3 forkhead box N3 protein_coding Mus_musculus

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