C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: MCF.2 cell line derived transforming sequence-like 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000053524 MCF2L2 9606 - 3:183178043-183428778 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000328913 MCF2L2-001 183178043-183428275 protein_coding
  ENST00000414362 MCF2L2-003 183272020-183428101 protein_coding
  ENST00000447025 MCF2L2-004 183228126-183428085 protein_coding
  ENST00000459750 MCF2L2-006 183298427-183400493 retained_intron
  ENST00000461074 MCF2L2-007 183372019-183400539 retained_intron
  ENST00000464626 MCF2L2-014 183179370-183180311 retained_intron
  ENST00000468976 MCF2L2-012 183182502-183207700 processed_transcript
  ENST00000473233 MCF2L2-008 183178050-183427977 protein_coding
  ENST00000475664 MCF2L2-011 183276666-183295366 retained_intron
  ENST00000478652 MCF2L2-013 183179289-183180313 retained_intron
  ENST00000482017 MCF2L2-010 183338829-183428778 protein_coding
  ENST00000488149 MCF2L2-005 183192649-183400548 retained_intron
  ENST00000492331 MCF2L2-015 183299769-183311027 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartKidneyLiverTestisENST00000328913ENST00000447025ENST00000459750ENST00000461074ENST00000473233
Transcript ID Adrenal Brain Heart Kidney Liver Testis
ENST00000328913 N/A 4.433±1.56 N/A N/A N/A N/A
ENST00000447025 N/A N/A N/A N/A 0.514±0.00 N/A
ENST00000459750 N/A N/A N/A 0.174±0.00 N/A N/A
ENST00000461074 0.266±0.00 N/A 0.038±0.00 0.016±0.00 0.035±0.00 N/A
ENST00000473233 N/A 5.068±3.50 N/A N/A 0.044±0.00 1.306±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003YD CIL_0003YD_0002 CGP 3:183178043-183428778

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079742 MCF2L2 MCF.2 cell line derived transforming sequence-like 2 protein_coding Danio_rerio

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