C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cytoplasmic FMR1 interacting protein 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000055163 CYFIP2 9606 + 5:157266079-157395598 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000435847 CYFIP2-006 157266123-157393223 protein_coding
  ENST00000518456 CYFIP2-026 157269375-157271576 processed_transcript
  ENST00000518511 CYFIP2-027 157300818-157303123 retained_intron
  ENST00000518555 CYFIP2-019 157325600-157328049 retained_intron
  ENST00000519663 CYFIP2-011 157383256-157393233 retained_intron
  ENST00000520424 CYFIP2-020 157327925-157341094 retained_intron
  ENST00000520942 CYFIP2-017 157311038-157314370 retained_intron
  ENST00000520960 CYFIP2-018 157323921-157328010 nonsense_mediated_decay
  ENST00000521420 CYFIP2-001 157266128-157395595 protein_coding
  ENST00000522463 CYFIP2-007 157266123-157393207 protein_coding
  ENST00000522637 CYFIP2-012 157266128-157304274 nonsense_mediated_decay
  ENST00000522775 CYFIP2-025 157384306-157390638 retained_intron
  ENST00000522884 CYFIP2-024 157384306-157389542 retained_intron
  ENST00000522892 CYFIP2-021 157361405-157383580 retained_intron
  ENST00000523383 CYFIP2-022 157383232-157393233 retained_intron
  ENST00000524058 CYFIP2-023 157383238-157389628 retained_intron
  ENST00000541131 CYFIP2-201 157266177-157395598 protein_coding
  ENST00000611075 CYFIP2-014 157266174-157300893 protein_coding
  ENST00000611925 CYFIP2-015 157266711-157302890 protein_coding
  ENST00000616178 CYFIP2-003 157266079-157393233 protein_coding
  ENST00000617629 CYFIP2-013 157266139-157307864 protein_coding
  ENST00000618329 CYFIP2-002 157269342-157393229 protein_coding
  ENST00000620254 CYFIP2-008 157266081-157393224 protein_coding
  ENST00000620969 CYFIP2-202 157266140-157393233 protein_coding
  ENST00000621516 CYFIP2-016 157277059-157304300 nonsense_mediated_decay
  ENST00000622696 CYFIP2-004 157266136-157304782 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000435847ENST00000519663ENST00000521420ENST00000522463ENST00000541131ENST00000618329ENST00000620254
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000435847 N/A N/A N/A N/A N/A 1.536±0.00 N/A N/A N/A N/A 0.732±0.00 2.028±0.00 N/A 1.265±0.00
ENST00000519663 4.224±0.00 53.850±0.00 N/A N/A N/A 7.247±0.00 N/A N/A N/A N/A 2.379±0.00 N/A 16.286±0.00 23.314±0.00
ENST00000521420 0.530±0.00 N/A N/A 4.875±0.00 N/A 1.002±0.00 N/A N/A N/A N/A N/A N/A 1.733±0.00 N/A
ENST00000522463 N/A N/A N/A N/A N/A N/A N/A N/A 2.926±0.00 N/A N/A N/A N/A 2.506±0.00
ENST00000541131 N/A 4.647±0.00 17.873±0.00 19.610±1.29 1.015±0.00 N/A 1.232±0.64 8.007±7.02 N/A N/A N/A 1.400±0.41 N/A N/A
ENST00000618329 N/A N/A 13.569±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620254 1.100±0.00 N/A N/A 20.190±4.31 0.685±0.00 1.729±0.00 2.671±1.50 12.898±8.69 4.218±0.00 10.133±0.00 N/A 2.270±1.62 4.811±0.00 2.363±1.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094M CIL_00094M_0001 VISTA 5:157087063-157688799
CIL_00023S CIL_00023S_0001 CGP 5:157266079-157395598

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005737 IDA:IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006915 IDA apoptotic process
GO:0006955 IEA immune response
GO:0008009 IEA chemokine activity
GO:0016020 IDA membrane
GO:0016337 IDA single organismal cell-cell adhesion
GO:0030054 IEA cell junction
GO:0038096 TAS Fc-gamma receptor signaling pathway involved in phagocytosis
GO:0043005 IEA neuron projection
GO:0045087 TAS innate immune response
GO:0045202 IDA synapse
GO:0045862 IDA positive regulation of proteolysis
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070062 IDA extracellular vesicular exosome
GO:0097202 IDA activation of cysteine-type endopeptidase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036375 cyfip2 cytoplasmic FMR1 interacting protein 2 protein_coding Danio_rerio
ENSMUSG00000020340 Cyfip2 cytoplasmic FMR1 interacting protein 2 protein_coding Mus_musculus

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