C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: metastasis associated 1 family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000057935 MTA3 9606 + 2:42494569-42756947 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000405094 MTA3-017 42568746-42753399 protein_coding
  ENST00000405592 MTA3-005 42494569-42756947 protein_coding
  ENST00000406652 MTA3-001 42568045-42756947 protein_coding
  ENST00000406911 MTA3-003 42568675-42709544 protein_coding
  ENST00000407270 MTA3-002 42568517-42709544 protein_coding
  ENST00000409019 MTA3-018 42568738-42754060 nonsense_mediated_decay
  ENST00000430763 MTA3-010 42568741-42659789 nonsense_mediated_decay
  ENST00000433553 MTA3-011 42569384-42609488 protein_coding
  ENST00000454356 MTA3-004 42568675-42709213 nonsense_mediated_decay
  ENST00000461256 MTA3-009 42568168-42659776 processed_transcript
  ENST00000467925 MTA3-006 42703649-42753848 retained_intron
  ENST00000472767 MTA3-014 42695765-42709153 processed_transcript
  ENST00000475383 MTA3-015 42695765-42709211 processed_transcript
  ENST00000478602 MTA3-016 42709075-42723334 retained_intron
  ENST00000482875 MTA3-007 42702307-42709213 retained_intron
  ENST00000484780 MTA3-008 42568111-42656302 processed_transcript
  ENST00000490611 MTA3-013 42659520-42682706 retained_intron
  ENST00000491314 MTA3-019 42613675-42644245 processed_transcript
  ENST00000493983 MTA3-012 42570437-42656205 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000405094ENST00000405592ENST00000406652ENST00000406911ENST00000407270ENST00000409019ENST00000454356ENST00000467925ENST00000472767ENST00000475383ENST00000478602ENST00000482875ENST00000493983
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000405094 1.743±0.00 N/A N/A 7.613±0.00 1.821±0.20 2.688±0.84 1.405±0.61 0.759±0.00 2.188±0.00 N/A 0.730±0.00 7.235±1.66 4.169±0.68 9.076±2.64
ENST00000405592 N/A 0.503±0.00 N/A 3.279±0.69 N/A N/A N/A N/A N/A 0.867±0.00 N/A 0.925±0.00 N/A 1.831±0.00
ENST00000406652 N/A 1.452±0.00 0.319±0.00 7.199±0.00 N/A 1.927±1.40 N/A N/A 0.557±0.28 1.523±0.00 N/A 6.303±0.80 0.712±0.00 2.489±0.00
ENST00000406911 N/A N/A N/A N/A 1.391±0.01 1.994±0.00 N/A N/A N/A 1.270±0.00 N/A N/A 2.729±0.07 N/A
ENST00000407270 N/A N/A 0.503±0.00 N/A N/A 2.067±0.00 N/A 1.456±0.00 0.529±0.00 N/A 0.760±0.00 5.142±1.39 N/A 4.120±0.00
ENST00000409019 N/A N/A N/A N/A 0.826±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000454356 3.294±0.00 1.710±0.00 N/A N/A 2.272±0.00 2.158±0.00 2.796±0.00 3.408±1.68 1.491±0.00 2.584±0.00 N/A 27.204±22.65 10.031±9.91 26.326±15.42
ENST00000467925 N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A 1.622±0.00 N/A N/A N/A
ENST00000472767 N/A N/A N/A N/A N/A N/A N/A N/A 1.961±0.00 N/A N/A N/A N/A N/A
ENST00000475383 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.918±0.00 N/A N/A N/A
ENST00000478602 N/A N/A N/A N/A N/A N/A 2.161±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000482875 N/A N/A N/A N/A 1.496±0.00 N/A N/A N/A N/A N/A N/A 2.127±0.00 N/A N/A
ENST00000493983 N/A N/A N/A N/A N/A N/A 3.966±0.00 N/A 8.173±0.00 N/A N/A 44.099±0.00 31.486±0.00 44.488±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003TA CIL_0003TA_0002 CGP 2:42442017-42756947
CIL_0003T7 CIL_0003T7_0002 CGP 2:42494569-42764261

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008278 IEA cohesin complex
GO:0008284 IEA positive regulation of cell proliferation
GO:0010971 IEA positive regulation of G2/M transition of mitotic cell cycle
GO:0016581 IEA NuRD complex
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054903 mta3 metastasis associated 1 family, member 3 protein_coding Danio_rerio
ENSMUSG00000055817 Mta3 metastasis associated 3 protein_coding Mus_musculus

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