C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ATPase, Ca++ transporting, type 2C, member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000064270 ATP2C2 9606 + 16:84368527-84464187 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000262429 ATP2C2-001 84368527-84464178 protein_coding
  ENST00000416219 ATP2C2-002 84368527-84464187 protein_coding
  ENST00000420010 ATP2C2-004 84406588-84464000 processed_transcript
  ENST00000563340 ATP2C2-011 84422427-84426051 retained_intron
  ENST00000564099 ATP2C2-012 84439039-84440892 retained_intron
  ENST00000565546 ATP2C2-007 84406588-84422534 processed_transcript
  ENST00000565631 ATP2C2-003 84404427-84464000 retained_intron
  ENST00000565927 ATP2C2-008 84406612-84415526 processed_transcript
  ENST00000566874 ATP2C2-015 84460763-84461602 retained_intron
  ENST00000567222 ATP2C2-005 84459606-84464179 retained_intron
  ENST00000567629 ATP2C2-014 84460694-84462086 retained_intron
  ENST00000567892 ATP2C2-013 84453236-84463730 retained_intron
  ENST00000568160 ATP2C2-010 84408438-84410907 retained_intron
  ENST00000569207 ATP2C2-009 84405220-84422398 nonsense_mediated_decay
  ENST00000624933 ATP2C2-006 84460288-84461778 TEC

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000262429ENST00000416219ENST00000420010ENST00000565546ENST00000565631ENST00000565927ENST00000567222ENST00000567892ENST00000568160ENST00000624933
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000262429 N/A 0.086±0.00 0.485±0.00 1.216±0.64 N/A 0.268±0.00 N/A 3.667±1.94 N/A 1.199±0.25 0.663±0.00 N/A
ENST00000416219 N/A N/A N/A N/A N/A 0.370±0.00 N/A N/A N/A 3.380±2.80 N/A 0.213±0.00
ENST00000420010 0.067±0.00 N/A N/A 1.092±0.54 N/A N/A N/A N/A N/A 1.845±1.04 0.302±0.00 0.090±0.00
ENST00000565546 N/A N/A N/A N/A N/A N/A 0.652±0.00 N/A N/A N/A N/A N/A
ENST00000565631 N/A N/A N/A 1.419±0.00 N/A N/A 0.056±0.00 N/A N/A 1.076±0.00 N/A N/A
ENST00000565927 N/A N/A N/A N/A 0.071±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000567222 N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A 0.107±0.00 N/A 0.035±0.00 N/A
ENST00000567892 N/A N/A N/A N/A 0.022±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000568160 N/A 0.842±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624933 N/A 0.196±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.051±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007IQ CIL_0007IQ_0001 CGP 16:84294646-84464187
CIL_000006 CIL_000006_0001 CGP 16:84368527-84554033

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000166 IEA nucleotide binding
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006816 IEA calcium ion transport
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0034220 TAS ion transmembrane transport
GO:0046872 IEA metal ion binding
GO:0055085 TAS transmembrane transport
GO:0070588 IEA calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000034112 Atp2c2 ATPase, Ca++ transporting, type 2C, member 2 protein_coding Mus_musculus

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