C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 3, delta 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065000 AP3D1 9606 - 19:2100988-2164465 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000345016 AP3D1-002 2100988-2151557 protein_coding
  ENST00000355272 AP3D1-001 2100994-2151541 protein_coding
  ENST00000585652 AP3D1-005 2100995-2112823 retained_intron
  ENST00000586177 AP3D1-008 2116767-2118626 retained_intron
  ENST00000586370 AP3D1-011 2101829-2110882 protein_coding
  ENST00000589223 AP3D1-006 2100989-2112406 retained_intron
  ENST00000589369 AP3D1-012 2102237-2110805 protein_coding
  ENST00000590683 AP3D1-014 2121049-2130478 nonsense_mediated_decay
  ENST00000591284 AP3D1-013 2130522-2164465 processed_transcript
  ENST00000591631 AP3D1-009 2115347-2120867 processed_transcript
  ENST00000591650 AP3D1-007 2101621-2111506 retained_intron
  ENST00000592488 AP3D1-010 2111791-2114239 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000345016ENST00000355272ENST00000586370ENST00000590683ENST00000591650
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000345016 N/A N/A 3.630±0.00 2.534±0.00 2.491±0.00 3.318±0.00 2.639±1.13 N/A 3.966±0.00 2.790±0.15 2.960±1.41 1.349±0.00 N/A N/A
ENST00000355272 5.956±0.00 26.372±0.00 0.752±0.00 15.160±12.62 5.558±3.98 11.058±9.85 8.121±7.80 18.143±15.21 13.390±8.80 12.631±0.00 28.511±0.00 24.007±9.01 30.195±8.94 33.528±6.48
ENST00000586370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 38.420±0.00 N/A N/A
ENST00000590683 N/A N/A 8.024±0.00 9.170±0.00 17.434±0.00 9.445±0.00 6.297±0.00 12.501±0.00 11.714±0.00 10.636±0.00 11.686±0.00 10.323±0.00 N/A N/A
ENST00000591650 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.903±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009F CIL_00009F_0001 CGP 19:2096429-2164465
CIL_00009C CIL_00009C_0001 CGP 19:2100988-2232578

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 TAS transporter activity
GO:0005488 IEA binding
GO:0005765 IDA lysosomal membrane
GO:0005794 IEA Golgi apparatus
GO:0006726 TAS eye pigment biosynthetic process
GO:0006886 IEA intracellular protein transport
GO:0008089 ISS anterograde axon cargo transport
GO:0008565 IEA protein transporter activity
GO:0010008 IDA endosome membrane
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019882 IEA antigen processing and presentation
GO:0030117 IEA membrane coat
GO:0030424 IEA axon
GO:0032438 IC melanosome organization
GO:0033365 IEA protein localization to organelle
GO:0035646 IMP endosome to melanosome transport
GO:0043195 IEA terminal bouton
GO:0048007 IEA antigen processing and presentation, exogenous lipid antigen via MHC class Ib
GO:0048490 ISS anterograde synaptic vesicle transport
GO:0048499 IEA synaptic vesicle membrane organization
GO:0051138 IEA positive regulation of NK T cell differentiation
GO:0061088 IMP regulation of sequestering of zinc ion
GO:0072657 IMP protein localization to membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071424 ap3d1 adaptor-related protein complex 3, delta 1 subunit protein_coding Danio_rerio
ENSMUSG00000020198 Ap3d1 adaptor-related protein complex 3, delta 1 subunit protein_coding Mus_musculus

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