C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger CCCH-type containing 15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000065548 ZC3H15 9606 + 2:186486156-186509363 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337859 ZC3H15-001 186486156-186509363 protein_coding
  ENST00000421536 ZC3H15-002 186486253-186506091 nonsense_mediated_decay
  ENST00000437396 ZC3H15-007 186486263-186501375 nonsense_mediated_decay
  ENST00000445547 ZC3H15-009 186506713-186509114 protein_coding
  ENST00000468120 ZC3H15-004 186486918-186504099 processed_transcript
  ENST00000477672 ZC3H15-006 186486267-186495319 processed_transcript
  ENST00000481101 ZC3H15-003 186486891-186504086 processed_transcript
  ENST00000496289 ZC3H15-005 186487270-186504070 processed_transcript
  ENST00000498757 ZC3H15-008 186505091-186508690 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337859ENST00000445547ENST00000498757
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337859 13.886±0.00 19.400±0.00 2.359±0.00 18.094±6.42 12.545±3.28 16.574±9.79 6.237±4.32 14.754±7.62 9.800±4.42 11.098±3.49 8.100±6.21 29.039±15.55 17.143±8.87 28.175±4.34
ENST00000445547 N/A N/A N/A 9.651±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.550±0.00
ENST00000498757 N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.487±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000Q4 CIL_0000Q4_0001 CGP 2:185738628-186509363
CIL_0002DB CIL_0002DB_0001 CGP 2:186486156-186680901

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0019221 IEA cytokine-mediated signaling pathway
GO:0044822 IDA poly(A) RNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000015889 zc3h15 zinc finger CCCH-type containing 15 protein_coding Danio_rerio
ENSMUSG00000027091 Zc3h15 zinc finger CCCH-type containing 15 protein_coding Mus_musculus

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