C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: stromal antigen 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000066923 STAG3 9606 + 7:100177563-100221488 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000317296 STAG3-001 100177916-100214381 protein_coding
  ENST00000394018 STAG3-003 100177743-100214380 protein_coding
  ENST00000412190 STAG3-022 100205273-100214380 protein_coding
  ENST00000416412 STAG3-012 100177866-100186297 protein_coding
  ENST00000422690 STAG3-009 100177929-100182839 protein_coding
  ENST00000426455 STAG3-004 100177563-100214380 protein_coding
  ENST00000439782 STAG3-010 100177936-100189468 protein_coding
  ENST00000440830 STAG3-006 100197474-100214383 processed_transcript
  ENST00000451963 STAG3-023 100205357-100221488 nonsense_mediated_decay
  ENST00000459699 STAG3-013 100181378-100189596 processed_transcript
  ENST00000476057 STAG3-021 100200138-100200946 retained_intron
  ENST00000477469 STAG3-016 100197802-100199602 retained_intron
  ENST00000479359 STAG3-017 100200147-100202015 retained_intron
  ENST00000482546 STAG3-011 100177937-100180895 retained_intron
  ENST00000491498 STAG3-020 100197442-100214381 processed_transcript
  ENST00000492674 STAG3-018 100211659-100214382 retained_intron
  ENST00000496157 STAG3-002 100177935-100214387 retained_intron
  ENST00000615138 STAG3-201 100177743-100214387 protein_coding
  ENST00000620100 STAG3-202 100177743-100214387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000317296ENST00000394018ENST00000412190ENST00000451963ENST00000491498
Transcript ID Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000317296 N/A N/A N/A N/A N/A N/A N/A N/A 19.622±1.76
ENST00000394018 N/A N/A N/A N/A N/A N/A N/A N/A 24.861±0.00
ENST00000412190 N/A N/A N/A N/A N/A 2.156±0.00 15.193±0.00 N/A 78.721±0.00
ENST00000451963 6.808±0.00 1.468±0.00 1.653±0.00 0.589±0.00 1.290±0.18 0.621±0.00 3.545±0.56 0.804±0.00 N/A
ENST00000491498 3.720±0.00 N/A N/A N/A N/A N/A N/A N/A 12.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0001 VISTA 7:99696610-100298804
CIL_0005CH CIL_0005CH_0001 CGP 7:100169606-100221488

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000775 IEA chromosome, centromeric region
GO:0000794 IEA condensed nuclear chromosome
GO:0000795 TAS synaptonemal complex
GO:0000800 IEA lateral element
GO:0000802 IEA transverse filament
GO:0001673 IEA male germ cell nucleus
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0007059 IEA chromosome segregation
GO:0007130 TAS synaptonemal complex assembly
GO:0030893 IDA meiotic cohesin complex
GO:0034991 IEA nuclear meiotic cohesin complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000076794 STAG3 stromal antigen 3 protein_coding Danio_rerio
ENSMUSG00000036928 Stag3 stromal antigen 3 protein_coding Mus_musculus

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