C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trophinin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000067445 TRO 9606 + X:54920462-54931431 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000173898 TRO-008 54920811-54931431 protein_coding
  ENST00000319167 TRO-017 54920811-54931431 protein_coding
  ENST00000375022 TRO-010 54920816-54931431 protein_coding
  ENST00000375041 TRO-009 54920851-54931431 protein_coding
  ENST00000399736 TRO-011 54920816-54931431 protein_coding
  ENST00000411534 TRO-024 54920462-54923356 protein_coding
  ENST00000416704 TRO-014 54921388-54923038 protein_coding
  ENST00000420798 TRO-201 54920563-54931429 protein_coding
  ENST00000427099 TRO-006 54921977-54923028 protein_coding
  ENST00000430420 TRO-012 54920796-54923240 protein_coding
  ENST00000431115 TRO-019 54920825-54925604 protein_coding
  ENST00000440072 TRO-016 54920824-54922674 protein_coding
  ENST00000440759 TRO-015 54920851-54923060 protein_coding
  ENST00000442098 TRO-021 54920796-54923036 protein_coding
  ENST00000445561 TRO-001 54920816-54931431 nonsense_mediated_decay
  ENST00000449980 TRO-013 54921084-54923033 protein_coding
  ENST00000452830 TRO-004 54920563-54922877 protein_coding
  ENST00000453081 TRO-018 54920811-54922856 protein_coding
  ENST00000469211 TRO-023 54927285-54928947 retained_intron
  ENST00000474933 TRO-022 54920825-54922738 processed_transcript
  ENST00000475183 TRO-007 54926822-54930865 processed_transcript
  ENST00000484031 TRO-020 54920824-54925659 processed_transcript
  ENST00000492142 TRO-005 54924378-54926480 processed_transcript
  ENST00000492706 TRO-003 54924488-54931429 retained_intron
  ENST00000622017 TRO-202 54920816-54931429 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000173898ENST00000319167ENST00000375022ENST00000375041ENST00000430420ENST00000440072ENST00000445561ENST00000453081ENST00000474933ENST00000475183ENST00000492142ENST00000492706ENST00000622017
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000173898 N/A 0.694±0.00 N/A 2.040±0.00 0.115±0.00 0.073±0.02 0.136±0.00 0.963±0.00 0.200±0.00 1.814±0.00 0.647±0.38 0.512±0.00
ENST00000319167 N/A N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000375022 N/A N/A N/A 6.398±0.00 0.193±0.00 N/A 0.185±0.00 N/A 0.146±0.00 N/A 0.422±0.00 N/A
ENST00000375041 0.366±0.00 N/A N/A N/A 2.115±0.00 0.218±0.14 N/A N/A N/A N/A N/A N/A
ENST00000430420 N/A N/A N/A N/A N/A 0.470±0.00 0.188±0.00 N/A N/A 1.063±0.00 N/A N/A
ENST00000440072 N/A N/A N/A N/A N/A 0.804±0.00 N/A N/A N/A N/A N/A N/A
ENST00000445561 N/A 0.469±0.00 N/A 3.157±0.69 N/A 0.180±0.00 0.270±0.00 N/A 0.727±0.00 4.752±4.01 0.815±0.15 0.543±0.17
ENST00000453081 N/A N/A N/A N/A 0.936±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474933 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.372±0.00 N/A
ENST00000475183 N/A N/A N/A N/A 0.539±0.00 N/A N/A N/A N/A 0.868±0.00 N/A N/A
ENST00000492142 N/A N/A N/A N/A N/A 0.737±0.00 N/A N/A N/A N/A N/A N/A
ENST00000492706 N/A 0.246±0.00 N/A N/A 1.250±0.00 0.110±0.00 0.085±0.00 1.042±0.00 0.396±0.00 3.629±2.93 0.999±0.00 0.457±0.00
ENST00000622017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.717±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007566 TAS embryo implantation
GO:0030308 IEA negative regulation of cell growth

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000058212 ndnl2 necdin-like 2 protein_coding Danio_rerio
ENSMUSG00000025272 Tro trophinin protein_coding Mus_musculus

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