C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Ras association (RalGDS/AF-6) domain family member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000068028 RASSF1 9606 - 3:50329782-50340980 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327761 RASSF1-007 50329782-50337464 protein_coding
  ENST00000357043 RASSF1-002 50329788-50340841 protein_coding
  ENST00000359365 RASSF1-001 50329788-50340912 protein_coding
  ENST00000395117 RASSF1-004 50329788-50340841 nonsense_mediated_decay
  ENST00000395126 RASSF1-005 50329788-50338233 protein_coding
  ENST00000478619 RASSF1-011 50336377-50340980 retained_intron
  ENST00000482447 RASSF1-003 50329788-50340912 nonsense_mediated_decay
  ENST00000488024 RASSF1-010 50336570-50340830 processed_transcript
  ENST00000494145 RASSF1-009 50336800-50338288 retained_intron
  ENST00000616212 RASSF1-201 50329786-50340936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327761ENST00000357043ENST00000359365ENST00000395117ENST00000395126ENST00000478619ENST00000482447ENST00000488024
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327761 14.906±0.00 11.258±0.00 N/A 5.528±4.68 6.181±4.78 11.380±0.00 2.437±2.09 4.605±4.25 0.390±0.00 21.400±19.83 3.056±0.00 11.771±6.04 17.616±4.05 27.049±8.12
ENST00000357043 N/A N/A N/A N/A N/A N/A 0.610±0.46 N/A N/A N/A 1.072±0.00 0.406±0.00 N/A N/A
ENST00000359365 N/A N/A N/A N/A 1.851±0.90 1.497±0.88 N/A N/A 1.418±0.00 0.361±0.00 N/A 3.299±0.00 3.614±0.00 N/A
ENST00000395117 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.622±0.00 N/A N/A N/A
ENST00000395126 N/A N/A 0.121±0.00 0.329±0.00 N/A N/A N/A 0.331±0.00 0.674±0.00 N/A N/A 1.487±0.00 N/A N/A
ENST00000478619 N/A N/A N/A N/A 2.096±0.00 N/A N/A N/A 0.516±0.00 0.902±0.00 N/A 1.283±0.00 N/A N/A
ENST00000482447 N/A 5.665±0.00 N/A N/A N/A N/A N/A 4.098±0.00 1.072±0.00 N/A N/A 4.307±0.00 N/A N/A
ENST00000488024 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.762±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0001 VISTA 3:50299047-50902727

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005874 IEA microtubule
GO:0005886 IDA plasma membrane
GO:0006974 IMP cellular response to DNA damage stimulus
GO:0007050 IMP cell cycle arrest
GO:0007165 IEA signal transduction
GO:0007265 IDA Ras protein signal transduction
GO:0008270 TAS zinc ion binding
GO:0015630 IDA microtubule cytoskeleton
GO:0031398 IDA positive regulation of protein ubiquitination
GO:0035556 IEA intracellular signal transduction
GO:0042802 IPI identical protein binding
GO:0047485 IPI protein N-terminus binding
GO:0050821 IDA protein stabilization
GO:0071157 IDA negative regulation of cell cycle arrest

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004840 rassf1 Ras association (RalGDS/AF-6) domain family 1 protein_coding Danio_rerio
ENSMUSG00000010067 Rassf1 Ras association (RalGDS/AF-6) domain family member 1 protein_coding Mus_musculus

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