C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin, heavy chain-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000070371 CLTCL1 9606 - 22:19179473-19291716 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000412649 CLTCL1-003 19179476-19184831 retained_intron
  ENST00000427926 CLTCL1-001 19179473-19291714 protein_coding
  ENST00000449918 CLTCL1-004 19254034-19291716 protein_coding
  ENST00000458188 CLTCL1-012 19221573-19226320 nonsense_mediated_decay
  ENST00000538828 CLTCL1-013 19183476-19187728 nonsense_mediated_decay
  ENST00000540896 CLTCL1-011 19229845-19232821 retained_intron
  ENST00000611723 CLTCL1-006 19196363-19209327 retained_intron
  ENST00000615606 CLTCL1-007 19180733-19291661 retained_intron
  ENST00000617103 CLTCL1-008 19180733-19291661 nonsense_mediated_decay
  ENST00000617926 CLTCL1-010 19179775-19207674 protein_coding
  ENST00000621271 CLTCL1-002 19179473-19291685 protein_coding
  ENST00000622493 CLTCL1-009 19179476-19207676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000412649ENST00000427926ENST00000449918ENST00000615606ENST00000617103ENST00000617926ENST00000621271ENST00000622493
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000412649 N/A 0.315±0.00 N/A 0.293±0.00 N/A 0.191±0.00 N/A N/A N/A N/A N/A 0.473±0.13 N/A N/A
ENST00000427926 N/A N/A N/A 0.471±0.43 N/A 0.433±0.00 1.311±0.00 N/A 0.132±0.00 N/A 86.554±76.76 0.139±0.00 0.184±0.00 10.803±1.91
ENST00000449918 N/A N/A 0.559±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000615606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.262±0.00 N/A N/A
ENST00000617103 N/A N/A 0.166±0.00 N/A N/A N/A N/A 0.193±0.00 0.758±0.00 0.237±0.00 N/A 1.070±0.00 N/A N/A
ENST00000617926 N/A N/A N/A N/A N/A 0.440±0.00 N/A N/A 0.152±0.00 N/A N/A N/A N/A N/A
ENST00000621271 0.832±0.00 0.410±0.00 N/A N/A 1.459±0.00 N/A 0.369±0.00 N/A N/A N/A N/A 0.555±0.26 0.313±0.04 3.626±0.00
ENST00000622493 N/A N/A N/A N/A N/A N/A N/A 0.873±0.00 N/A 1.105±0.00 N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004871 TAS signal transducer activity
GO:0005198 IEA structural molecule activity
GO:0005488 IEA binding
GO:0005515 IPI protein binding
GO:0005802 IDA trans-Golgi network
GO:0005819 IDA spindle
GO:0005905 IDA coated pit
GO:0006886 IEA intracellular protein transport
GO:0006898 IDA receptor-mediated endocytosis
GO:0007067 IDA mitotic nuclear division
GO:0007165 TAS signal transduction
GO:0009653 TAS anatomical structure morphogenesis
GO:0016020 IDA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0030135 IDA coated vesicle
GO:0030136 IDA clathrin-coated vesicle
GO:0046326 IMP positive regulation of glucose import
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067562 CLTC (2 of 3) clathrin, heavy chain-like 1 protein_coding Danio_rerio
ENSDARG00000088853 CLTCL1 (1 of 2) clathrin, heavy chain-like 1 protein_coding Danio_rerio
ENSDARG00000091618 CLTCL1 (2 of 2) clathrin, heavy chain-like 1 protein_coding Danio_rerio

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