C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: cadherin-related family member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074276 CDHR2 9606 + 5:176542511-176595974 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261944 CDHR2-003 176549391-176595768 protein_coding
  ENST00000416365 CDHR2-007 176590601-176591690 retained_intron
  ENST00000506348 CDHR2-002 176565306-176595697 protein_coding
  ENST00000508085 CDHR2-006 176586659-176589570 retained_intron
  ENST00000510124 CDHR2-004 176543541-176568767 nonsense_mediated_decay
  ENST00000510636 CDHR2-001 176542511-176595974 protein_coding
  ENST00000513031 CDHR2-005 176586651-176590661 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungOvaryTestisENST00000261944ENST00000506348ENST00000508085ENST00000510636
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Ovary Testis
ENST00000261944 N/A N/A 4.747±0.00 N/A 2.735±0.00 6.451±0.00 N/A 1.221±0.00 0.772±0.00
ENST00000506348 0.542±0.00 0.398±0.00 0.276±0.00 0.008±0.00 2.563±0.00 N/A 0.036±0.00 0.325±0.00 N/A
ENST00000508085 N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000510636 N/A 0.018±0.00 N/A N/A N/A 0.099±0.00 N/A 0.291±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000OY CIL_0000OY_0002 CGP 5:176526697-176595974
CIL_0002N6 CIL_0002N6_0001 CGP 5:176542511-176610133

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0007155 IDA cell adhesion
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IDA integral component of membrane
GO:0030054 IEA cell junction
GO:0030308 IDA negative regulation of cell growth
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000068586 CDHR2 (1 of 2) cadherin-related family member 2 protein_coding Danio_rerio
ENSDARG00000089176 CDHR2 (2 of 2) cadherin-related family member 2 protein_coding Danio_rerio
ENSMUSG00000034918 Cdhr2 cadherin-related family member 2 protein_coding Mus_musculus

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