C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: synuclein, beta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000074317 SNCB 9606 - 5:176620084-176630556 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310112 SNCB-001 176620084-176630364 protein_coding
  ENST00000393693 SNCB-002 176620241-176630529 protein_coding
  ENST00000506696 SNCB-003 176620785-176630000 protein_coding
  ENST00000508006 SNCB-004 176621214-176630048 retained_intron
  ENST00000510387 SNCB-005 176620681-176629994 protein_coding
  ENST00000614675 SNCB-201 176620210-176630556 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000310112ENST00000393693ENST00000506696ENST00000510387ENST00000614675
Transcript ID Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000310112 N/A N/A N/A N/A N/A N/A N/A N/A 0.365±0.00 N/A N/A
ENST00000393693 N/A 129.718±111.75 N/A 0.456±0.00 0.130±0.00 0.050±0.00 0.170±0.00 0.112±0.00 0.075±0.04 0.248±0.00 0.674±0.17
ENST00000506696 N/A N/A N/A N/A N/A 0.099±0.00 0.099±0.00 0.142±0.00 N/A 0.055±0.00 N/A
ENST00000510387 0.040±0.00 N/A 0.301±0.00 0.095±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000614675 0.075±0.00 39.396±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0002ND CIL_0002ND_0001 CGP 5:176595802-176630556
CIL_0002NC CIL_0002NC_0001 CGP 5:176620084-176646641

Gene Ontology
GO IDEvidence TypeGO Description
GO:0004859 TAS phospholipase inhibitor activity
GO:0005509 IDA calcium ion binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IEA mitochondrion
GO:0005794 IDA Golgi apparatus
GO:0007268 IEA synaptic transmission
GO:0016234 IDA inclusion body
GO:0030426 IEA growth cone
GO:0042417 IEA dopamine metabolic process
GO:0043014 IEA alpha-tubulin binding
GO:0043025 IEA neuronal cell body
GO:0043086 TAS negative regulation of catalytic activity
GO:0043195 IEA terminal bouton
GO:0043524 IEA negative regulation of neuron apoptotic process
GO:0043679 IEA axon terminus
GO:0045202 IEA synapse
GO:0048487 IEA beta-tubulin binding
GO:0050808 IEA synapse organization

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041627 sncb synuclein, beta protein_coding Danio_rerio
ENSMUSG00000034891 Sncb synuclein, beta protein_coding Mus_musculus

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